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nanshe-org / nanshe_workflow

Provides a Jupyter workflow for running nanshe.
Apache License 2.0
3 stars 4 forks source link

Explore using JupyterLab #163

Open jakirkham opened 6 years ago

jakirkham commented 6 years ago

The workflow can benefit from some of the features in JupyterLab. Would be good to explore using the workflow in JupyterLab and what functionality can be used with it.

jakirkham commented 5 years ago

Currently Zarr's tree visualization does not work on JupyterLab. ( https://github.com/zarr-developers/zarr/issues/259 ) Also the Jupyter notebook extensions won't work with with JupyterLab. ( https://github.com/ipython-contrib/jupyter_contrib_nbextensions/pull/1343 ) So something will need to be done to address these issues before completely switching to JupyterLab.

One intermediate solution might be to have a side-by-side install of the Jupyter Notebook and JupyterLab. This would be possible through JupyterHub and would make most sense as a single user install. This will require at least Matplotlib to be compatible with JupyterLab, which can be done with jupyter-matplotlib a.k.a. ipympl.