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nanshe-org / nanshe_workflow

Provides a Jupyter workflow for running nanshe.
Apache License 2.0
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Export ImageJ ROIs #44

Open jakirkham opened 7 years ago

jakirkham commented 7 years ago

Has been requested by a user to be able to export ImageJ ROIs. Couple of options for doing this. One is to use PymageJ, which is able to write ImageJ ROIs. Unfortunately it is GPLd, which would force a licensing change here that seems undesirable IMHO. A second option is to use ijroi, which is able to read ImageJ ROIs, which is under the MIT license. However, we would need to add a way to write them. ( https://github.com/tdsmith/ijroi/issues/3 )

jakirkham commented 7 years ago

As I'm not sure what time we have to pursue this currently, am going to simply try to package PymageJ so that people can make use of this to generated their own ImageJ ROIs if they wish.

xref: https://github.com/conda-forge/staged-recipes/pull/2434

jakirkham commented 5 years ago

Should add ijroi has been packaged as well. ( https://github.com/conda-forge/staged-recipes/pull/1831 )