Tested my running prepare-dashboard-data.sh which successfully completed and saved ribocounts to sample_metadata[sample]["ribocounts"] in cases where the file exists.
Also added a --chunk_size argument to the ribocounts function in run.py to address memory issues which I suspect were causing the screen processes to die.
Tested my running
prepare-dashboard-data.shwhich successfully completed and saved ribocounts tosample_metadata[sample]["ribocounts"]in cases where the file exists.Also added a
--chunk_sizeargument to the ribocounts function inrun.pyto address memory issues which I suspect were causing the screen processes to die.