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naobservatory / mgs-pipeline

MIT License
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bowtie: make map for interpreting genome ids #37

Closed jeffkaufman closed 7 months ago

jeffkaufman commented 7 months ago

When we run bowtie we get genome ids, but usually we actually want taxids. Make a map so it's easy to get back to taxids.

lennijusten commented 7 months ago

I don't think I have enough context here to do a meaningful review. I haven't worked with refseq or the NCBI API. General note is that I would find these easier to review with even a small number of comments describing what a function or call does :P

simonleandergrimm commented 7 months ago

I can look at it today or tomorrow

On Fri, 17 Nov 2023 at 1:51 PM Lenni Justen @.***> wrote:

I don't think I have enough context here to do a meaningful review. I haven't worked with refseq or the NCBI API. General note is that I would find these easier to review with even a small number of comments describing what a function or call does :P

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