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naobservatory / mgs-pipeline

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classifier-comparison: first cut at classifier framework #55

Closed jeffkaufman closed 6 months ago

jeffkaufman commented 6 months ago

Example:

$ ./evaluate.py kraken-assigments kraken-hits p2ra no-human-hv-bowtie
                            totpos  truepos  trueneg  falsepos  falseneg
kraken-assigments              581        6      180         0        41
kraken-hits                    852        8      180         0        39
p2ra                           577        6      180         0        41
no-human-hv-bowtie            2391       36      158        22        11
no-bact-no-human-hv-bowtie    1968       36      175         5        11

See https://docs.google.com/document/d/1_xApUNo1TrdCZBcIp2YzqkOrOmLsrC03RMUJ96-Tf4E/edit