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naobservatory / mgs-pipeline

MIT License
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ribofrac: fix typo #57

Closed jeffkaufman closed 6 months ago

jeffkaufman commented 6 months ago

A few months ago I noticed that ribofrac was giving errors like:

Traceback (most recent call last):
  File "./run.py", line 1551, in <module>
    start()
  File "./run.py", line 1547, in start
    STAGE_FNS[stage](args)
  File "./run.py", line 391, in ribofrac
    if total_files_in_sample == empty_files_for_sample:
NameError: name 'empty_files_for_sample' is not defined

I should have flagged this at the time, but I was lazy and just started passing --skip-stages=ribofrac and moved on...

Debugging this now, it seems that this was introduced in 574827d514009004712e5eee09a95a48ff5af93e and was a simple typo.

With this fixed, ribofrac now runs to completion again.

lennijusten commented 6 months ago

Thanks!