search

naobservatory / mgs-workflow

3 stars 2 forks source link

arb-silva data is not available anymore. #2

Closed simonleandergrimm closed 2 months ago

simonleandergrimm commented 2 months ago

The download URLs for ribosomal RNA return 404.

https://www.arb-silva.de/fileadmin/silva_databases/release_138.1/Exports/SILVA_138.1_SSURef_NR99_tax_silva.fasta.gz
https://www.arb-silva.de/fileadmin/silva_databases/release_138.1/Exports/SILVA_138.1_LSURef_NR99_tax_silva.fasta.gz

When visiting arb-silva.de's archive it shows up as empty: https://www.arb-silva.de/index.php?id=272 I checked the internet archive and the archive still had content some time ago. I will contact arb-silva about this but @willbradshaw let me know if you know of an easy replacement for this data.

willbradshaw commented 2 months ago

It's showing up for me: https://www.arb-silva.de/no_cache/download/archive/release_138_1/Exports/

On Wed, 17 Apr 2024 at 10:23, simonleandergrimm @.***> wrote:

The download URLs for ribosomal RNA return 404.

https://www.arb-silva.de/fileadmin/silva_databases/release_138.1/Exports/SILVA_138.1_SSURef_NR99_tax_silva.fasta.gzhttps://www.arb-silva.de/fileadmin/silva_databases/release_138.1/Exports/SILVA_138.1_LSURef_NR99_tax_silva.fasta.gz

When visiting arb-silva.de's archive it shows up as empty: https://www.arb-silva.de/index.php?id=272 I checked the internet archive and the archive still had content some time ago. I will contact arb-silva about this but @willbradshaw https://github.com/willbradshaw let me know if you know of an easy replacement for this data.

— Reply to this email directly, view it on GitHub https://github.com/naobservatory/mgs-workflow/issues/2, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADWVV6QDQHXKJS6PE5WN2NTY52AU7AVCNFSM6AAAAABGLN4BBKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGI2DQNBSHE3TIMY . You are receiving this because you were mentioned.Message ID: @.***>

simonleandergrimm commented 2 months ago

Yes, because they fixed it right after I contacted them 🚀

Dear Simon,

there are currently some issue with our hosting environment which our IT department could not yet resolve. I am not sure if that also caused the archive issue or if that was related to some maintenance today. I was able to restore the access to the archive, though.

Best regards, Jan

simonleandergrimm commented 2 months ago

Closing this issue given that arb-silva fixed it.