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naobservatory / mgs-workflow

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Add profiles for different run settings #21

Closed willbradshaw closed 1 week ago

willbradshaw commented 3 weeks ago

Nextflow pipelines can have profiles that modify many settings at once. This would be useful for e.g. running the pipeline locally on EC2 vs using an S3 workdir vs running on Batch.

willbradshaw commented 1 week ago

Implemented in dev branch.

willbradshaw commented 1 week ago

(Still need to update documentation to reflect this.)