Consider adding a check that the required files are present at the start of the workflow

naobservatory / mgs-workflow

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Consider adding a check that the required files are present at the start of the workflow #23

Open mikemc opened 2 weeks ago

mikemc commented 2 weeks ago

I had things running for a while before I got an error from not renaming my read files to the required format (_{1,2}.fastq.gz), in process HANDLE_RAW_READS_TRUNC:CONCAT_GZIPPED. It would be handy to catch this error and fail early on, before doing anything that takes lots of time or disk space.