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naobservatory / p2ra

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Create estimates for HPV (genital and oral) subtypes, once we have extensive DNA metagenomic sequencing data. #143

Closed simonleandergrimm closed 1 year ago

simonleandergrimm commented 1 year ago 
          In addition to estimating for HPV overall, could we also separate out the different types?  Just from your current source we could distinguish  6/11, 16/18/31/33/35/39/45/51/52/56/58/59, 16/18/31/33/35/39/45/51/52/56/58/59/66/68, and 6/11/16/18/31/33/35/39/45/51/52/56/58/59/66/68.  And maybe if we used NHANES data we could get estimates for each subtype?

But this shouldn't block this PR going it -- if you wanted to do this it should be a follow-up.

_Originally posted by @jeffkaufman in https://github.com/naobservatory/p2ra/pull/138#discussion_r1218092372_

simonleandergrimm commented 1 year ago

Superseded by #201