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naobservatory / p2ra

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Run model with read exclusions #220

Closed dp-rice closed 1 year ago

dp-rice commented 1 year ago

Bump the MGS data tag to remove false-positive read assignments from counts.

Updated prevalence plot:

prevalence-violin

Also, incidentally resolves #218

jeffkaufman commented 1 year ago

Would it be possible to include Brinch for HIV and HCV, since those two reads look real?

dp-rice commented 1 year ago

Recall that we don't have public health estimates for those. Otherwise they should be there automatically

dp-rice commented 1 year ago

Also @jeffkaufman I forgot to push a commit

jeffkaufman commented 1 year ago

Should this PR include fits_summary.tsv?

jeffkaufman commented 1 year ago

Recall that we don't have public health estimates for those. Otherwise they should be there automatically

pinging @simonleandergrimm ;)

dp-rice commented 1 year ago

Ok, ready now.