psobolewskiPhD
commented
1 year ago FYI, trying this branch with main napari gives a TypeError related to in-n-out I think:
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
File ~/Dev/miniforge3/envs/napari-dev/lib/python3.10/site-packages/in_n_out/_store.py:774, in Store.inject.<locals>._inner.<locals>._exec(*args=(), **kwargs={})
773 try:
--> 774 result = func(**_kwargs)
_kwargs = {'viewer': Viewer(axes=AxesOverlay(visible=False, opacity=1.0, order=1000000, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 127.5, 127.5), zoom=2.62734375, angles=(0.0, 0.0, 90.0), perspective=0.0, interactive=True), cursor=Cursor(position=(30.0, 1.0, 0.0, 0.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=4, ndisplay=2, last_used=0, range=((0.0, 60.0, 1.0), (0.0, 2.0, 1.0), (0.0, 256.0, 1.0), (0.0, 256.0, 1.0)), current_step=(30, 1, 128, 128), order=(0, 1, 2, 3), axis_labels=('0', '1', '2', '3')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'my_image_data' at 0x14db13a90>], scale_bar=ScaleBarOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, colored=False, color=<class 'numpy.ndarray'> (4,) float32, ticks=True, font_size=10.0, box=False, box_color=<class 'numpy.ndarray'> (4,) float32, unit=None), text_overlay=TextOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, color=<class 'numpy.ndarray'> (4,) float32, font_size=10.0, text=''), overlays=Overlays(interaction_box=InteractionBox(points=None, show=False, show_handle=False, show_vertices=False, selection_box_drag=None, selection_box_final=None, transform_start=<napari.utils.transforms.transforms.Affine object at 0x13a86ad40>, transform_drag=<napari.utils.transforms.transforms.Affine object at 0x13a86ada0>, transform_final=<napari.utils.transforms.transforms.Affine object at 0x13a86ae00>, transform=<napari.utils.transforms.transforms.Affine object at 0x13a86ae60>, allow_new_selection=True, selected_vertex=None)), help='', status='Ready', tooltip=Tooltip(visible=True, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_move at 0x14a20f2e0>], mouse_drag_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_drag at 0x14a016c20>], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x13a6bef80>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'Shift': <function InteractionBoxMouseBindings.initialize_key_events.<locals>.hold_to_lock_aspect_ratio at 0x14a017490>, 'Control-Shift-R': <function InteractionBoxMouseBindings._reset_active_layer_affine at 0x14a1d5bd0>, 'Control-Shift-A': <function InteractionBoxMouseBindings._transform_active_layer at 0x14a1d5b40>})}
func = <function toggle_console_visibility at 0x13a6edbd0>
775 except TypeError as e:
776 # likely a required argument is still missing.
777 # show what was injected and raise
File ~/Dev/napari/napari/components/_viewer_key_bindings.py:130, in toggle_console_visibility(viewer=Viewer(axes=AxesOverlay(visible=False, opacity=1...indings._transform_active_layer at 0x14a1d5b40>}))
124 @register_viewer_action(
125 trans._(
126 "Show/Hide IPython console (only available when napari started as standalone application)"
127 )
128 )
129 def toggle_console_visibility(viewer: Viewer):
--> 130 viewer.window._qt_viewer.toggle_console_visibility()
viewer = Viewer(axes=AxesOverlay(visible=False, opacity=1.0, order=1000000, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 127.5, 127.5), zoom=2.62734375, angles=(0.0, 0.0, 90.0), perspective=0.0, interactive=True), cursor=Cursor(position=(30.0, 1.0, 0.0, 0.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=4, ndisplay=2, last_used=0, range=((0.0, 60.0, 1.0), (0.0, 2.0, 1.0), (0.0, 256.0, 1.0), (0.0, 256.0, 1.0)), current_step=(30, 1, 128, 128), order=(0, 1, 2, 3), axis_labels=('0', '1', '2', '3')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'my_image_data' at 0x14db13a90>], scale_bar=ScaleBarOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, colored=False, color=<class 'numpy.ndarray'> (4,) float32, ticks=True, font_size=10.0, box=False, box_color=<class 'numpy.ndarray'> (4,) float32, unit=None), text_overlay=TextOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, color=<class 'numpy.ndarray'> (4,) float32, font_size=10.0, text=''), overlays=Overlays(interaction_box=InteractionBox(points=None, show=False, show_handle=False, show_vertices=False, selection_box_drag=None, selection_box_final=None, transform_start=<napari.utils.transforms.transforms.Affine object at 0x13a86ad40>, transform_drag=<napari.utils.transforms.transforms.Affine object at 0x13a86ada0>, transform_final=<napari.utils.transforms.transforms.Affine object at 0x13a86ae00>, transform=<napari.utils.transforms.transforms.Affine object at 0x13a86ae60>, allow_new_selection=True, selected_vertex=None)), help='', status='Ready', tooltip=Tooltip(visible=True, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_move at 0x14a20f2e0>], mouse_drag_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_drag at 0x14a016c20>], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x13a6bef80>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'Shift': <function InteractionBoxMouseBindings.initialize_key_events.<locals>.hold_to_lock_aspect_ratio at 0x14a017490>, 'Control-Shift-R': <function InteractionBoxMouseBindings._reset_active_layer_affine at 0x14a1d5bd0>, 'Control-Shift-A': <function InteractionBoxMouseBindings._transform_active_layer at 0x14a1d5b40>})
File ~/Dev/napari/napari/_qt/qt_viewer.py:898, in QtViewer.toggle_console_visibility(self=<napari._qt.qt_viewer.QtViewer object>, event=None)
897 # force instantiation of console if not already instantiated
--> 898 _ = self.console
self = <napari._qt.qt_viewer.QtViewer object at 0x13c38b9a0>
900 viz = not self.dockConsole.isVisible()
File ~/Dev/napari/napari/_qt/qt_viewer.py:488, in QtViewer.console(self=<napari._qt.qt_viewer.QtViewer object>)
487 warnings.filterwarnings("ignore")
--> 488 self.console = QtConsole(self.viewer)
self = <napari._qt.qt_viewer.QtViewer object at 0x13c38b9a0>
QtConsole = <class 'napari_console.qt_console.QtConsole'>
self.viewer = Viewer(axes=AxesOverlay(visible=False, opacity=1.0, order=1000000, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 127.5, 127.5), zoom=2.62734375, angles=(0.0, 0.0, 90.0), perspective=0.0, interactive=True), cursor=Cursor(position=(30.0, 1.0, 0.0, 0.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=4, ndisplay=2, last_used=0, range=((0.0, 60.0, 1.0), (0.0, 2.0, 1.0), (0.0, 256.0, 1.0), (0.0, 256.0, 1.0)), current_step=(30, 1, 128, 128), order=(0, 1, 2, 3), axis_labels=('0', '1', '2', '3')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'my_image_data' at 0x14db13a90>], scale_bar=ScaleBarOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, colored=False, color=<class 'numpy.ndarray'> (4,) float32, ticks=True, font_size=10.0, box=False, box_color=<class 'numpy.ndarray'> (4,) float32, unit=None), text_overlay=TextOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, color=<class 'numpy.ndarray'> (4,) float32, font_size=10.0, text=''), overlays=Overlays(interaction_box=InteractionBox(points=None, show=False, show_handle=False, show_vertices=False, selection_box_drag=None, selection_box_final=None, transform_start=<napari.utils.transforms.transforms.Affine object at 0x13a86ad40>, transform_drag=<napari.utils.transforms.transforms.Affine object at 0x13a86ada0>, transform_final=<napari.utils.transforms.transforms.Affine object at 0x13a86ae00>, transform=<napari.utils.transforms.transforms.Affine object at 0x13a86ae60>, allow_new_selection=True, selected_vertex=None)), help='', status='Ready', tooltip=Tooltip(visible=True, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_move at 0x14a20f2e0>], mouse_drag_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_drag at 0x14a016c20>], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x13a6bef80>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'Shift': <function InteractionBoxMouseBindings.initialize_key_events.<locals>.hold_to_lock_aspect_ratio at 0x14a017490>, 'Control-Shift-R': <function InteractionBoxMouseBindings._reset_active_layer_affine at 0x14a1d5bd0>, 'Control-Shift-A': <function InteractionBoxMouseBindings._transform_active_layer at 0x14a1d5b40>})
489 self.console.push(
490 {'napari': napari, 'action_manager': action_manager}
491 )
File ~/Dev/napari-console/napari_console/qt_console.py:143, in QtConsole.__init__(self=<napari_console.qt_console.QtConsole object>, viewer=Viewer(axes=AxesOverlay(visible=False, opacity=1...indings._transform_active_layer at 0x14a1d5b40>}))
140 raise ValueError(
141 'ipython shell not recognized; ' f'got {type(shell)}'
142 )
--> 143 self._capture()
self = <napari_console.qt_console.QtConsole object at 0x13c38bd00>
144 # Add any user variables
File ~/Dev/napari-console/napari_console/qt_console.py:160, in QtConsole._capture(self=<napari_console.qt_console.QtConsole object>)
157 """
158 Capture variable from first enclosing scope that is not napari
159 """
--> 160 with CallerFrame(_not_napari) as c:
161 self.push(dict(c.namespace))
File ~/Dev/napari/napari/utils/naming.py:106, in CallerFrame.__enter__(self=<napari.utils.naming.CallerFrame object>)
101 n = 1
102 while (
103 inspect.isframe(frame)
104 and inspect.isframe(frame.f_back)
105 and inspect.iscode(frame.f_code)
--> 106 and (self.predicate(n, frame))
self = <napari.utils.naming.CallerFrame object at 0x14fc59990>
n = 1
self.predicate = <function _not_napari at 0x14bc9f130>
107 ):
108 n += 1
TypeError: _not_napari() takes 1 positional argument but 2 were given
The above exception was the direct cause of the following exception:
TypeError Traceback (most recent call last)
File ~/Dev/napari/napari/utils/action_manager.py:227, in ActionManager.bind_button.<locals>.<lambda>()
219 if isgeneratorfunction(action):
220 raise ValueError(
221 trans._(
222 '`bind_button` cannot be used with generator functions',
223 deferred=True,
224 )
225 )
--> 227 button.clicked.connect(lambda: self.trigger(name))
name = 'napari:toggle_console_visibility'
self = <napari.utils.action_manager.ActionManager object at 0x129e66e00>
228 if name in self._actions:
229 button.setToolTip(
230 f'{self._build_tooltip(name)} {extra_tooltip_text}'
231 )
File ~/Dev/napari/napari/utils/action_manager.py:427, in ActionManager.trigger(self=<napari.utils.action_manager.ActionManager object>, name='napari:toggle_console_visibility')
425 def trigger(self, name: str) -> Any:
426 """Trigger the action `name`."""
--> 427 return self._actions[name].injected()
self._actions[name].injected = <function toggle_console_visibility at 0x14a0164d0>
self._actions[name] = Action(command=<function toggle_console_visibility at 0x13a6edbd0>, description='Show/Hide IPython console (only available when napari started as standalone application)', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False)
self._actions = {'napari:orient_plane_normal_along_z': Action(command=<function orient_plane_normal_along_z at 0x139da7640>, description='Orient plane normal along z-axis', keymapprovider=<class 'napari.layers.image.image.Image'>, repeatable=False), 'napari:orient_plane_normal_along_y': Action(command=<function orient_plane_normal_along_y at 0x139da7760>, description='orient plane normal along y-axis', keymapprovider=<class 'napari.layers.image.image.Image'>, repeatable=False), 'napari:orient_plane_normal_along_x': Action(command=<function orient_plane_normal_along_x at 0x139da77f0>, description='orient plane normal along x-axis', keymapprovider=<class 'napari.layers.image.image.Image'>, repeatable=False), 'napari:orient_plane_normal_along_view_direction': Action(command=<function orient_plane_normal_along_view_direction at 0x139da75b0>, description='orient plane normal along view direction', keymapprovider=<class 'napari.layers.image.image.Image'>, repeatable=False), 'napari:activate_image_select_mode': Action(command=<function activate_image_select_mode at 0x139da79a0>, description='Transform', keymapprovider=<class 'napari.layers.image.image.Image'>, repeatable=False), 'napari:activate_image_pan_zoom_mode': Action(command=<function activate_image_pan_zoom_mode at 0x139da7a30>, description='Pan/zoom', keymapprovider=<class 'napari.layers.image.image.Image'>, repeatable=False), 'napari:activate_paint_mode': Action(command=<function activate_paint_mode at 0x139d37490>, description='Activate the paint brush', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:activate_fill_mode': Action(command=<function activate_fill_mode at 0x139d375b0>, description='Activate the fill bucket', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:activate_label_pan_zoom_mode': Action(command=<function activate_label_pan_zoom_mode at 0x139d376d0>, description='Pan/zoom mode', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:activate_label_picker_mode': Action(command=<function activate_label_picker_mode at 0x139d377f0>, description='Pick mode', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:activate_label_erase_mode': Action(command=<function activate_label_erase_mode at 0x139d37910>, description='Activate the label eraser', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:new_label': Action(command=<function new_label at 0x139d379a0>, description='Set the currently selected label to the largest used label plus one.', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:decrease_label_id': Action(command=<function decrease_label_id at 0x139d37a30>, description='Decrease the currently selected label by one.', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:increase_label_id': Action(command=<function increase_label_id at 0x139d37ac0>, description='Increase the currently selected label by one.', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:decrease_brush_size': Action(command=<function decrease_brush_size at 0x139d37b50>, description='Decrease the paint brush size by one.', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=True), 'napari:increase_brush_size': Action(command=<function increase_brush_size at 0x139d37be0>, description='Increase the paint brush size by one.', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=True), 'napari:toggle_preserve_labels': Action(command=<function toggle_preserve_labels at 0x139d37d00>, description='Toggle preserve labels', keymapprovider=<class 'napari.layers.labels.labels.Labels'>, repeatable=False), 'napari:activate_points_add_mode': Action(command=<function activate_points_add_mode at 0x139ef6d40>, description='Add points', keymapprovider=<class 'napari.layers.points.points.Points'>, repeatable=False), 'napari:activate_points_select_mode': Action(command=<function activate_points_select_mode at 0x139ef6dd0>, description='Select points', keymapprovider=<class 'napari.layers.points.points.Points'>, repeatable=False), 'napari:activate_points_pan_zoom_mode': Action(command=<function activate_points_pan_zoom_mode at 0x139ef6ef0>, description='Pan/zoom', keymapprovider=<class 'napari.layers.points.points.Points'>, repeatable=False), 'napari:select_all_in_slice': Action(command=<function select_all_in_slice at 0x139ef7130>, description='Select all points in the current view slice.', keymapprovider=<class 'napari.layers.points.points.Points'>, repeatable=False), 'napari:select_all_data': Action(command=<function select_all_data at 0x139ef71c0>, description='Select all points in the layer.', keymapprovider=<class 'napari.layers.points.points.Points'>, repeatable=False), 'napari:delete_selected_points': Action(command=<function delete_selected_points at 0x139ef70a0>, description='Delete selected points', keymapprovider=<class 'napari.layers.points.points.Points'>, repeatable=False), 'napari:activate_add_rectangle_mode': Action(command=<function activate_add_rectangle_mode at 0x13a58b250>, description='Add rectangles', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_add_ellipse_mode': Action(command=<function activate_add_ellipse_mode at 0x13a58b370>, description='Add ellipses', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_add_line_mode': Action(command=<function activate_add_line_mode at 0x13a58b490>, description='Add lines', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_add_path_mode': Action(command=<function activate_add_path_mode at 0x13a58b5b0>, description='Add path', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_add_polygon_mode': Action(command=<function activate_add_polygon_mode at 0x13a58b6d0>, description='Add polygons', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_direct_mode': Action(command=<function activate_direct_mode at 0x13a58b7f0>, description='Select vertices', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_select_mode': Action(command=<function activate_select_mode at 0x13a58b910>, description='Select shapes', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_shape_pan_zoom_mode': Action(command=<function activate_shape_pan_zoom_mode at 0x13a58ba30>, description='Pan/Zoom', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_vertex_insert_mode': Action(command=<function activate_vertex_insert_mode at 0x13a58bb50>, description='Insert vertex', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:activate_vertex_remove_mode': Action(command=<function activate_vertex_remove_mode at 0x13a58bc70>, description='Remove vertex', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:copy_selected_shapes': Action(command=<function copy_selected_shapes at 0x13a58bd00>, description='Copy any selected shapes', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:paste_shape': Action(command=<function paste_shape at 0x13a58bd90>, description='Paste any copied shapes', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:select_all_shapes': Action(command=<function select_all_shapes at 0x13a58be20>, description='Select all shapes in the current view slice', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:delete_selected_shapes': Action(command=<function delete_selected_shapes at 0x13a58beb0>, description='Delete any selected shapes', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:move_shapes_selection_to_front': Action(command=<function move_shapes_selection_to_front at 0x13a58bf40>, description='Move to front', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:move_shapes_selection_to_back': Action(command=<function move_shapes_selection_to_back at 0x13a598040>, description='Move to back', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:finish_drawing_shape': Action(command=<function finish_drawing_shape at 0x13a5980d0>, description='Finish any drawing, for example when using the path or polygon tool.', keymapprovider=<class 'napari.layers.shapes.shapes.Shapes'>, repeatable=False), 'napari:reset_scroll_progress': Action(command=<function reset_scroll_progress at 0x13a6ed6c0>, description='Reset scroll.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:toggle_ndisplay': Action(command=<function toggle_ndisplay at 0x13a6ed870>, description='Toggle ndisplay.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:toggle_theme': Action(command=<function toggle_theme at 0x13a6ed7e0>, description='Toggle theme.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:reset_view': Action(command=<function reset_view at 0x13a6eda20>, description='Reset view to original state.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:increment_dims_left': Action(command=<function increment_dims_left at 0x13a6ed990>, description='Increment dimensions slider to the left.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:increment_dims_right': Action(command=<function increment_dims_right at 0x13a6ed750>, description='Increment dimensions slider to the right.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:focus_axes_up': Action(command=<function focus_axes_up at 0x13a6ed000>, description='Move focus of dimensions slider up.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:focus_axes_down': Action(command=<function focus_axes_down at 0x13a6ed900>, description='Move focus of dimensions slider down.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:roll_axes': Action(command=<function roll_axes at 0x13a6ed510>, description='Change order of the visible axes, e.g. [0, 1, 2] -> [2, 0, 1].', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:transpose_axes': Action(command=<function transpose_axes at 0x13a6ecf70>, description='Transpose order of the last two visible axes, e.g. [0, 1] -> [1, 0].', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:toggle_grid': Action(command=<function toggle_grid at 0x13a6edab0>, description='Toggle grid mode.', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:toggle_selected_visibility': Action(command=<function toggle_selected_visibility at 0x13a6edb40>, description='Toggle visibility of selected layers', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:toggle_console_visibility': Action(command=<function toggle_console_visibility at 0x13a6edbd0>, description='Show/Hide IPython console (only available when napari started as standalone application)', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:show_shortcuts': Action(command=<function show_shortcuts at 0x13abdd750>, description='Show all key bindings', keymapprovider=<class 'napari.components.viewer_model.ViewerModel'>, repeatable=False), 'napari:reset_active_layer_affine': Action(command=<bound method InteractionBoxMouseBindings._reset_active_layer_affine of <napari.components.overlays._interaction_box_mouse_bindings.InteractionBoxMouseBindings object at 0x14a09a110>>, description='Reset the affine transform of the active layer', keymapprovider=Viewer(axes=AxesOverlay(visible=False, opacity=1.0, order=1000000, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 127.5, 127.5), zoom=2.62734375, angles=(0.0, 0.0, 90.0), perspective=0.0, interactive=True), cursor=Cursor(position=(30.0, 1.0, 0.0, 0.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=4, ndisplay=2, last_used=0, range=((0.0, 60.0, 1.0), (0.0, 2.0, 1.0), (0.0, 256.0, 1.0), (0.0, 256.0, 1.0)), current_step=(30, 1, 128, 128), order=(0, 1, 2, 3), axis_labels=('0', '1', '2', '3')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'my_image_data' at 0x14db13a90>], scale_bar=ScaleBarOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, colored=False, color=<class 'numpy.ndarray'> (4,) float32, ticks=True, font_size=10.0, box=False, box_color=<class 'numpy.ndarray'> (4,) float32, unit=None), text_overlay=TextOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, color=<class 'numpy.ndarray'> (4,) float32, font_size=10.0, text=''), overlays=Overlays(interaction_box=InteractionBox(points=None, show=False, show_handle=False, show_vertices=False, selection_box_drag=None, selection_box_final=None, transform_start=<napari.utils.transforms.transforms.Affine object at 0x13a86ad40>, transform_drag=<napari.utils.transforms.transforms.Affine object at 0x13a86ada0>, transform_final=<napari.utils.transforms.transforms.Affine object at 0x13a86ae00>, transform=<napari.utils.transforms.transforms.Affine object at 0x13a86ae60>, allow_new_selection=True, selected_vertex=None)), help='', status='Ready', tooltip=Tooltip(visible=True, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_move at 0x14a20f2e0>], mouse_drag_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_drag at 0x14a016c20>], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x13a6bef80>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'Shift': <function InteractionBoxMouseBindings.initialize_key_events.<locals>.hold_to_lock_aspect_ratio at 0x14a017490>, 'Control-Shift-R': <function InteractionBoxMouseBindings._reset_active_layer_affine at 0x14a1d5bd0>, 'Control-Shift-A': <function InteractionBoxMouseBindings._transform_active_layer at 0x14a1d5b40>}), repeatable=False), 'napari:transform_active_layer': Action(command=<bound method InteractionBoxMouseBindings._transform_active_layer of <napari.components.overlays._interaction_box_mouse_bindings.InteractionBoxMouseBindings object at 0x14a09a110>>, description='Activate transform mode for the active layer', keymapprovider=Viewer(axes=AxesOverlay(visible=False, opacity=1.0, order=1000000, labels=True, colored=True, dashed=False, arrows=True), camera=Camera(center=(0.0, 127.5, 127.5), zoom=2.62734375, angles=(0.0, 0.0, 90.0), perspective=0.0, interactive=True), cursor=Cursor(position=(30.0, 1.0, 0.0, 0.0), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=4, ndisplay=2, last_used=0, range=((0.0, 60.0, 1.0), (0.0, 2.0, 1.0), (0.0, 256.0, 1.0), (0.0, 256.0, 1.0)), current_step=(30, 1, 128, 128), order=(0, 1, 2, 3), axis_labels=('0', '1', '2', '3')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'my_image_data' at 0x14db13a90>], scale_bar=ScaleBarOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, colored=False, color=<class 'numpy.ndarray'> (4,) float32, ticks=True, font_size=10.0, box=False, box_color=<class 'numpy.ndarray'> (4,) float32, unit=None), text_overlay=TextOverlay(visible=False, opacity=1.0, order=1000000, position=<CanvasPosition.BOTTOM_RIGHT: 'bottom_right'>, color=<class 'numpy.ndarray'> (4,) float32, font_size=10.0, text=''), overlays=Overlays(interaction_box=InteractionBox(points=None, show=False, show_handle=False, show_vertices=False, selection_box_drag=None, selection_box_final=None, transform_start=<napari.utils.transforms.transforms.Affine object at 0x13a86ad40>, transform_drag=<napari.utils.transforms.transforms.Affine object at 0x13a86ada0>, transform_final=<napari.utils.transforms.transforms.Affine object at 0x13a86ae00>, transform=<napari.utils.transforms.transforms.Affine object at 0x13a86ae60>, allow_new_selection=True, selected_vertex=None)), help='', status='Ready', tooltip=Tooltip(visible=True, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_move at 0x14a20f2e0>], mouse_drag_callbacks=[<function InteractionBoxMouseBindings.initialize_mouse_events.<locals>.mouse_drag at 0x14a016c20>], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x13a6bef80>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={'Shift': <function InteractionBoxMouseBindings.initialize_key_events.<locals>.hold_to_lock_aspect_ratio at 0x14a017490>, 'Control-Shift-R': <function InteractionBoxMouseBindings._reset_active_layer_affine at 0x14a1d5bd0>, 'Control-Shift-A': <function InteractionBoxMouseBindings._transform_active_layer at 0x14a1d5b40>}), repeatable=False)}
name = 'napari:toggle_console_visibility'
self = <napari.utils.action_manager.ActionManager object at 0x129e66e00>
File ~/Dev/miniforge3/envs/napari-dev/lib/python3.10/site-packages/in_n_out/_store.py:781, in Store.inject.<locals>._inner.<locals>._exec(*args=(), **kwargs={})
775 except TypeError as e:
776 # likely a required argument is still missing.
777 # show what was injected and raise
778 _argnames = (
779 f"arguments: {set(_kwargs)!r}" if _kwargs else "NO arguments"
780 )
--> 781 raise TypeError(
782 f"After injecting dependencies for {_argnames}, {e}"
783 ) from e
785 return result
TypeError: After injecting dependencies for arguments: {'viewer'}, _not_napari() takes 1 positional argument but 2 were given
codecov[bot]
Carreau
brisvag
Czaki
jni
Should fix napari/napari#4098 Replaces napari/napari#4140, and see discussion there as well Needs napari/napari#4212