slurm parameters added to specific rules as needed for cluster limits actually being enforced
slurm-status.py script added for checking/reporting status per rule when slurm is used
fix where some ITS datasets would fail biome creation
version bump in Snakefile to v1.1.1
updated changelog
updated protocol doc
added versions to tools
added assay-specific suffixes to output files
Once this is merged, then need to create packaged pre-release for v1.1.1 with the appropriate workflow files (needs to be done after merging so the tag that is created while making the pre-release points to the correct point in the repo timeline). Then will update the usage page to specify 1.1.1 once the pre-release is there.
Once this is merged, then need to create packaged pre-release for v1.1.1 with the appropriate workflow files (needs to be done after merging so the tag that is created while making the pre-release points to the correct point in the repo timeline). Then will update the usage page to specify 1.1.1 once the pre-release is there.