SW_AmpIllumina-B Fixes - Githubissues

nasa / GeneLab_Data_Processing

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SW_AmpIllumina-B Fixes #68

Closed torres-alexis closed 5 months ago

torres-alexis commented 5 months ago

Add enable_visualizations to default config.yaml example
Fix run_workflow.py issue with single assay amplicon OSDR datasets
Account for different sizes of characters in dendrogram sample label scaling
Account for volcano plot x-axis labels that are too long to fit on plot
Stand-alone visualization script execution changes:
- Add new visualizations/README.md for manual execution
- Reference this README in Workflow Documentation's --visualizations description details
- Add RColorBrewer palette variable to R script, include it in visualizations/README.md
- Move envs/R_visualizations.yaml to visualizations/R_visualizations.yaml
- Rename visualizations script variable "final_outputs_dir" to "plots_dir"