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natapol / kitsune

a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
GNU General Public License v3.0
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KITSUNE is not working #8

Closed yh1126611 closed 1 year ago

yh1126611 commented 1 year ago

When I try to run kitsune cre it will never end. I know it takes long for large genomes, but after 24 hours, it is still at 0%.

When I run the provided example command with the example files, I get: OSError: [Errno 24] Too many open files

dacheampong commented 1 year ago

Hello, thanks for your interest in Kitsune, I'm trying to reproduce the error at my end. Could you share the command you using and the python version. Kitsune cre works on a single genome at a time.