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nate-d-olson / nanopore

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revise minimap2 arguments #8

Closed nate-d-olson closed 5 years ago

nate-d-olson commented 5 years ago

Using optimized parameters and defining read groups -R STR | SAM read group line in a format like @RG\tID:foo\tSM:bar [].

nate-d-olson commented 5 years ago

check for whale tool input requirements namely paf file