data.nist.gov submission - Githubissues

nate-d-olson / rtgm10169_manuscript

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data.nist.gov submission #1

Open nate-d-olson opened 2 years ago

nate-d-olson commented 2 years ago

data organization

Directory to submit the data to Mac: smb://cfscloud.nist.gov/midas_uploads/2714

ONT files on oneDrive under SARs-CoV-2-RGTM

Raw fast5s
Basecalled fastqs
Sequencing summary file (output from ONT basecaller) (Under SARs-CoV-2-RGTM/nist-sars-cov2-rtgm-seq)
Bams

Ill

Raw fastqs
Bams

Control Seqs

Reference fasta (Under SARs-CoV-2-RGTM/nist-sars-cov2-rtgm-seq/resources)
Annotations (Under SARs-CoV-2-RGTM/nist-sars-cov2-rtgm-seq/resources)
Primer bed (Under SARs-CoV-2-RGTM/nist-sars-cov2-rtgm-seq/resources)
Analyses
QC report from genewiz (do you still have this?)
Coverage info
Lofreq vcf

nate-d-olson commented 2 years ago

Need to check the workstation for the remaining files.