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natefoo / slurm-drmaa

DRMAA for Slurm: Implementation of the DRMAA C bindings for Slurm
GNU General Public License v3.0
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Problems during compilation #16

Closed sysadmincaos closed 5 years ago

sysadmincaos commented 5 years ago

Hi, I'm trying to compile slurm-drmaa-1.2.0-dev.deca826 for SLURM 17-11.5 and I'm getting errors during "configure" step. I'm executing "./configure --prefix=/tmp/test-slurm-drmaa --with-slurm-inc=/soft/slurm-17.11.5/include/slurm/ --with-slurm-lib=/soft/slurm-17.11.5/lib/" (my SLURM installation is installed in a NFS folder called /soft") and error is "SLURM libraries/headers not found; add --with-slurm-inc and --with-slurm-lib with appropriate locations."

Could you help me?

Thanks.

natefoo commented 5 years ago

The correct value for --with-slurm-inc is probably --with-slurm-inc=/soft/slurm-17.11.5/include, but you can find out more by looking in to config.log, going to the bottom, and then scrolling upward to find the test failure that resulted in this error, which should provide more context.

jvanbraekel commented 5 years ago

Hello,

I got the same error, using SLURM 17.11.2 when both libraries and headers files where present but the libslurmdb sources were missings. On my Ubuntu distribution slurm source and slurmdb sources are part of two differents pakages : libslurm-dev and libslurmdb-dev namely. Installing the last one have fix the issue. Maybe that can help.

sysadmincaos commented 5 years ago

Hello,

Finally, I solved it by following step-by-step this procedure: curl -#o slurm-drmaa-1.0.7.tar.gz http://apps.man.poznan.pl/trac/slurm-drmaa/downloads/9 tar -xf slurm-drmaa-1.0.7.tar.gz cd slurm-drmaa-1.0.7 p=$(which srun) p=${p%/bin/srun}/lib:$LD_LIBRARY_PATH export LD_LIBRARY_PATH="$p" ./configure #CFLAGS="-g -O0" --> aquí, antes del #CFLAGS, le meto el --prefix que yo quiera make make install

rm -r slurm-drmaa*

    # Make the config file writeable by group_galaxy:
    sudo touch /etc/slurm_drmaa.conf
    sudo cp /etc/slurm_drmaa.conf /etc/slurm_drmaa.conf.original
    sudo chown :group_galaxy /etc/slurm_drmaa.conf
    sudo chmod g+w /etc/slurm_drmaa.conf
    # Test the drmaa-run binary by submitting a small job:
    export DRMAA_LIBRARY_PATH=/usr/local/lib/libdrmaa.so
    echo 'echo "Test executed on host $(hostname) by user $USER"' > test.drmaa
    drmaa-run bash test.drmaa

Change versions for your convenience and copy new generated files to your SLURM lib and include folders.