[ec2-user@ip-XX-XX-XX-XX slurm-drmaa-1.1.2]$ ./configure && make
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for gcc option to accept ISO C99... none needed
checking how to run the C preprocessor... gcc -E
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /bin/ld
checking if the linker (/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B
checking the name lister (/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make sets $(MAKE)... (cached) yes
checking whether ln -s works... yes
checking whether gcc accepts -Wno-missing-field-initializers... yes
checking whether gcc accepts -Wno-format-zero-length... yes
checking whether gcc is Clang... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
configure: checking for SLURM
checking for SLURM compile flags... -I/opt/slurm/include
checking for SLURM library dir... /opt/slurm/lib
checking for slurmdb_users_get in -lslurm... yes
Using slurm libraries -lslurm
checking for usable SLURM libraries/headers... yes
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for working volatile... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for strftime... yes
checking for vprintf... yes
checking for _doprnt... no
checking for asprintf... yes
checking for fstat... yes
checking for getcwd... yes
checking for gettimeofday... yes
checking for localtime_r... yes
checking for memset... yes
checking for mkstemp... yes
checking for setenv... yes
checking for strcasecmp... yes
checking for strchr... yes
checking for strdup... yes
checking for strerror... yes
checking for strlcpy... no
checking for strndup... yes
checking for strstr... yes
checking for strtol... yes
checking for vasprintf... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating test/Makefile
config.status: creating slurm_drmaa/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in drmaa_utils (/home/ec2-user/slurm-drmaa-1.1.2/drmaa_utils)
configure: WARNING: no configuration information is in drmaa_utils
Run 'make' now.
make all-recursive
make[1]: Entering directory /home/ec2-user/slurm-drmaa-1.1.2' Making all in drmaa_utils make[2]: Entering directory/home/ec2-user/slurm-drmaa-1.1.2/drmaa_utils'
make[2]: No rule to make target all'. Stop. make[2]: Leaving directory/home/ec2-user/slurm-drmaa-1.1.2/drmaa_utils'
make[1]: [all-recursive] Error 1
make[1]: Leaving directory `/home/ec2-user/slurm-drmaa-1.1.2'
make: *** [all] Error 2
I followed the instructions given on github page. I am using slurm version 20.11.7 on AWS parallel cluster.
export SLURM_INCLUDE_PATH=/opt/slurm/include/slurm export SLURM_LIBRARY_PATH=/opt/slurm/lib
export LD_LIBRARY_PATH=/opt/slurm/lib
3 ./configure && make
Error I get is as following error
[ec2-user@ip-XX-XX-XX-XX slurm-drmaa-1.1.2]$ ./configure && make checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for gcc option to accept ISO C99... none needed checking how to run the C preprocessor... gcc -E checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /bin/ld checking if the linker (/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B checking the name lister (/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking whether gcc accepts -Wno-missing-field-initializers... yes checking whether gcc accepts -Wno-format-zero-length... yes checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes configure: checking for SLURM checking for SLURM compile flags... -I/opt/slurm/include checking for SLURM library dir... /opt/slurm/lib checking for slurmdb_users_get in -lslurm... yes Using slurm libraries -lslurm checking for usable SLURM libraries/headers... yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for an ANSI C-conforming const... yes checking for inline... inline checking for working volatile... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for strftime... yes checking for vprintf... yes checking for _doprnt... no checking for asprintf... yes checking for fstat... yes checking for getcwd... yes checking for gettimeofday... yes checking for localtime_r... yes checking for memset... yes checking for mkstemp... yes checking for setenv... yes checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strlcpy... no checking for strndup... yes checking for strstr... yes checking for strtol... yes checking for vasprintf... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating test/Makefile config.status: creating slurm_drmaa/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands === configuring in drmaa_utils (/home/ec2-user/slurm-drmaa-1.1.2/drmaa_utils) configure: WARNING: no configuration information is in drmaa_utils
Run 'make' now. make all-recursive make[1]: Entering directory
/home/ec2-user/slurm-drmaa-1.1.2' Making all in drmaa_utils make[2]: Entering directory
/home/ec2-user/slurm-drmaa-1.1.2/drmaa_utils' make[2]: No rule to make targetall'. Stop. make[2]: Leaving directory
/home/ec2-user/slurm-drmaa-1.1.2/drmaa_utils' make[1]: [all-recursive] Error 1 make[1]: Leaving directory `/home/ec2-user/slurm-drmaa-1.1.2' make: *** [all] Error 2