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nathanin / micron2

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remove dependency on pytiff #18

Closed nathanin closed 2 years ago

nathanin commented 3 years ago

We use pytiff to read from specific regions of paged tiffs. Unfortunately pytiff seems unavailable on some platforms like Apple Silicon. It might be possible to either save the whole tiff in an hdf5 dataset, or reconstruct it from the images dataset in the hdf5 data. Especially worth looking into the latter option, to significantly reduce the amount of data being passed around.

nathanin commented 2 years ago

I think this is done.

pytiff has been replaced by tifffile almost everywhere, especially in the image reading workhorse utility