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nathanweeks / exonerate

A fork of exonerate: a generic tool for sequence alignment
GNU General Public License v3.0
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The make does not appear to be working on my linux machine #9

Closed bmusungu closed 3 years ago

bmusungu commented 8 years ago

Been trying to compile the exonerate file but keep getting the bottom errors

DEPDIR=.deps depmode=none /bin/sh ../../depcomp \ gcc -DPACKAGE_NAME=\"exonerate\" -DPACKAGE_TARNAME=\"exonerate\" -DPACKAGE_VERSION=\"2.4.0\" -DPACKAGE_STRING=\"exonerate\ 2.4.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -D_XOPEN_SOURCE=600 -DHAVE_DECL__XOPEN_PATH_MAX=0 -D_XOPEN_PATH_MAX=1024 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"lu\"" -g -O2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c fsm.test.c /bin/sh: ../../depcomp: No such file or directory Makefile:396: recipe for target 'fsm.test.o' failed make[2]: * [fsm.test.o] Error 127 make[2]: Leaving directory '/home/bryan/exonerate/src/struct' Makefile:258: recipe for target 'all-recursive' failed make[1]: * [all-recursive] Error 1 make[1]: Leaving directory '/home/bryan/exonerate/src' Makefile:284: recipe for target 'all-recursive' failed make: *\ [all-recursive] Error 1

Thanks

Bryan

nathanweeks commented 8 years ago

I apologize for the slow response. It looks like you checked out the develop branch. Did you get an error message when running autoreconf -i?

wuxiaopei0509 commented 4 years ago

I have the same problem.how did you solve the issue at last? Thanks

Ofsm commented 4 years ago

what happen with this issue? Im having the same problem

nathanweeks commented 3 years ago

I've added a Dockerfile to the repo that, in addition to providing a mechanism for easily building a Docker image with exonerate, also illustrates how to install (into /usr/local/) on Ubuntu 20.04. Hopefully that provides enough hints to build exonerate in the target environment, but if not, please provide details on the software environment (target operating system version, compiler, etc.), the version of exonerate (e.g., git commit) that is being compiled, the list of commands used to configure/make.