EDIT: False alarm, I forgot a parameter in the command. (chimeric).
It actually works very well. It was just the Readme that confused me a little bit :sweat_smile: .
Hi Pierre,
I'm very interested by your package, but the installation fails or almost fails. I tried to install from conda, source and cargo on my mac 10.14.4 and via Docker (official Rust image) for source and cargo. The two next commands outputs the same thing everytime:
Get the help message
yacrd 0.5.1 Omanyte
Pierre Marijon <pierre.marijon@inria.fr>
Yet Another Chimeric Read Detector
USAGE:
yacrd [SUBCOMMAND]
FLAGS:
-h, --help Prints help information
-V, --version Prints version information
SUBCOMMANDS:
chimeric In chimeric mode yacrd detect chimera if coverage gap are in middle of read
help Prints this message or the help of the given subcommand(s)
scrubbing In scrubbing mode yacrd remove all part of read not covered
Run chimera detection
yacrd -i /data/mapping.paf -o /data/reads.yacrd
error: Found argument '-i' which wasn't expected, or isn't valid in this context
USAGE:
yacrd [SUBCOMMAND]
For more information try --help
Do you have any idea of the origin of the problem?
EDIT: False alarm, I forgot a parameter in the command. (
chimeric
). It actually works very well. It was just the Readme that confused me a little bit :sweat_smile: .Hi Pierre,
I'm very interested by your package, but the installation fails or almost fails. I tried to install from conda, source and cargo on my mac 10.14.4 and via Docker (official Rust image) for source and cargo. The two next commands outputs the same thing everytime:
Do you have any idea of the origin of the problem?
Regards,