Closed gouthamatla closed 5 years ago
RASQUAL discards a part of fSNPs which are less covered by sequenced reads. However the number never exceeds the number of SNPs overlapping exons (specified by -m). If you can provide us your data we can further investigate what happened in your data.
Best regards, Natsuhiko
Sorry. I solved it. I was not providing proper start and end coordinates of exons. Its working fine now.
I am getting this error
I would like to know how RASQUAL determines the number of fSNPs. I calculated the fSNPs as the ones that overlaps the exons of that gene.