Visualizing QTLs (coverage boxplot)

natsuhiko / rasqual

Robust Allele Specific Quantification and quality controL

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Visualizing QTLs (coverage boxplot) #35

Open wlwtan opened 4 years ago

wlwtan commented 4 years ago

Hi,

In order to visualize the association between genotype of a specific locus and the expression/chip height, I am wondering if "unprocessed raw count" should be used ?

For the detection of QTLs, I have included covariates in the analysis. Is there any function included in the package that would generate covariate-adjusted expression count?

Wilson

natsuhiko commented 4 years ago

The covariates are included in the model, and it is impossible to generate the adjusted count from the model.