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naturalis / barcode-constrained-phylogeny

Pipeline for building topologically-constrained phylogenies from DNA barcode data
https://naturalis.github.io/barcode-constrained-phylogeny/
Apache License 2.0
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COI-5P filtering in API request not working (retrieve_bold.py) #2

Closed Naomivanes closed 1 year ago

Naomivanes commented 1 year ago

Other markers are kept in the records. At this point it is filtered using the pandas dataframe. Only 1536 barcodes remain (needs to be looked at if it is correct).

Naomivanes commented 1 year ago

A snapshot of the database will be used. The download can be found in the following link: https://www.boldsystems.org/index.php/datapackage?id=BOLD_Public.30-Dec-2022