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naturalis / supersmart

Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa
MIT License
17 stars 5 forks source link

Exabayes now broken on vagrant box #60

Closed rvosa closed 9 years ago

rvosa commented 9 years ago

:-(

hettling commented 9 years ago

Still fails on VM with error g++: internal compiler error: Killed (program cc1plus) although if I log onto the VM and invoke the same commands, it compiles fine.

rvosa commented 9 years ago

works on my newly built VM, though with a warning: t/exabayes.t ............ 1/? Use of uninitialized value in concatenation (.) or string at /home/vagrant/SUPERSMART/src/supersmart/blib/lib/Bio/Tools/Run/Phylo/ExaBayes.pm line 291.

rvosa commented 9 years ago

It appears that t/exabayes.t is passing on Travis, so I am going to assume that this issue has been fixed.

hettling commented 9 years ago

I did not take any action, since I could not replicate this warning...

rvosa commented 9 years ago

Nope, still broken: unit test stalls.

rvosa commented 9 years ago

Mmm... never mind. The unit test just takes very long. Still got the 'uninitialized' warning at line 291 of Exabayes.pm, but worked around it.