Connectivity data for flywire

[denertekin]

Hi Greg, I'm getting an error when i try to map flywire neuron partners. "Error in flywire_connectome_file(type, version = version, cached = cached) path" .../syn_proof_analysis_filtered_630.feather does not exist!"

i installed the fw data from: fafbseg::download_flywire_release_data()

Deniz

[jefferis]

Dear Deniz, thanks for this report. Is that the full error message? If so there’s something funny about the path. Can you put the results of

fafbseg:::flywire_connectome_basedir()

And for good measure

dr_fafbseg()

Thanks, Greg

Sent from my iPhone

On 28 Aug 2023, at 06:38, denertekin @.***> wrote:

 Hi Greg, I'm getting an error when i try to map flywire neuron partners. "Error in flywire_connectome_file(type, version = version, cached = cached) path" .../syn_proof_analysis_filtered_630.feather does not exist!"

i installed the fw data from: fafbseg::download_flywire_release_data()

Deniz

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[denertekin]

Hi Greg, no it is not the full path, here is the full path.

fafbseg:::flywire_connectome_basedir() [1] "C:\Users\uqdertek\AppData\Local/R/fafbseg/flywire_connectome_analysis_data/R/fafbseg/flywire_connectome_analysis_data"

and dr_fafbseg()

R packages

fafbseg package: Version: 0.13 GithubSHA1: 5617c7516a3cda69eb9ab622399cc19097d3b168 Packaged: 2023-08-28 07:39:11 UTC; uqdertek

-- File: R arrow package: 7.0.0 FlyWire

Checking secrets folder for tokens from R: C:/Users/uqdertek/.cloudvolume/secrets Valid FlyWire ChunkedGraph token is set and found by R! Please use simple_python to install python+cloudvolume for full access to flywire API!

1 FlyWire/CloudVolume credential files available at C:/Users/uqdertek/.cloudvolume/secrets [1] "cave-secret.json" Error : invalid version specification ‘NA’

Flywire cloudvolume URL: graphene://https://prod.flywire-daf.com/segmentation/table/fly_v31 Google FFN1 segmentation

• Set the fafbseg.skelziproot option: options(fafbseg.skelziproot="/path/to/zips") if you want to use FFN1 skeleton files!

Python

python: C:/Users/uqdertek/AppData/Local/Programs/Python/Python311/python.exe libpython: C:/Users/uqdertek/AppData/Local/Programs/Python/Python311/python311.dll pythonhome: C:/Users/uqdertek/AppData/Local/Programs/Python/Python311 version: 3.11.0 (main, Oct 24 2022, 18:26:48) [MSC v.1933 64 bit (AMD64)] Architecture: 64bit numpy: [NOT FOUND]

NOTE: Python version was forced by use_python function

Error in $<-.data.frame(*tmp*, "installed", value = TRUE) : replacement has 1 row, data has 0

[jefferis]

Thanks. I see the problem and I’ll be able to fix. Sorry this package has already been used & tested quite a lot on mac/Linux but you are doing the testing on Windows which is unfortunately not a development platform for us. Should be fixed tomorrow.

[jefferis]

@denertekin please restart R, update the fafbseg package

natmanager::install(pkgs="fafbseg")

And then try again and the data downloads should behave. Thanks for helping to debug on windows.

[denertekin]

Hi Greg,

thank you very much, they are behaving!