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natverse / nat.flybrains

Support for Drosophila bridging/mirroring registrations in R
https://natverse.github.io/nat.flybrains
GNU General Public License v3.0
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Add T1, IBNWB, etc. brain surfaces #19

Open jdmanton opened 10 years ago

jefferis commented 9 years ago

Have sent @ajdm a T1surf-ascii.surf which should be suitable for T1, which is likely to be the main one that people will want (since it is the template for the VT dataset).

jdmanton commented 9 years ago

T1 surface added in bc5d69a6d96ce7bec1374cfbcf8f74c421bdcef6.

jdmanton commented 9 years ago

I'll sort out IBN and IBNWB on gjac, when it's free. Are there any others we should add?

jdmanton commented 9 years ago

I'm having trouble with IBN/IBNWB in that the isosurface that Amira produces is not great, even with downsampling. It looks like the fairly variable 'staining' of the brain means that it's hard to produce a good isosurface, especially in that if you want to have decent optic lobes you need a low threshold, to avoid holes, but this then means there's lots of rubbish included near the central brain.