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natverse / nat.flybrains

Support for Drosophila bridging/mirroring registrations in R
https://natverse.github.io/nat.flybrains
GNU General Public License v3.0
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Missing template brains #33

Open jefferis opened 8 years ago

jefferis commented 8 years ago

Although https://github.com/jefferislab/nat.flybrains/issues/25 tried to bring template brains up to date, we have no template object for the following:

> library(nat.flybrains)
> setdiff(igraph::V(bridging_graph())$name, ls(envir = as.environment('package:nat.flybrains')))
[1] "Dyak"       "Cell07"     "JFRC2014"   "JFRC2014DS" "V2"
jefferis commented 8 years ago

@lgoetz Are we supposed to have a Dyak template?

@ajdm Any chance you would be able to make appropriate template objects for the ones that you have handy and let me know what's left.

lgoetz commented 8 years ago

yes, we should have a Dyakuba intersex brain.

since it was made up of only 7 brains each, we excluded it from the voxel-wise analysis and it might also not be any good for bridging as a result

jdmanton commented 8 years ago

@ajdm https://github.com/ajdm Any chance you would be able to make appropriate template objects for the ones that you have handy and let me know what's left. Sorry, I missed the original email notification of your question. I have some JFRC2013/14 registrations on my laptop, but no surface model for

  1. Similarly, I have the V2 nrrd and registrations, but no surface model. As far as I can find, I have absolutely nothing for Dyak and Cell07.

I think the Dyak template is in my nfs3 store, in a directory called drosophilidDBM, or something similar.

jefferis commented 8 years ago

Hi @ajdm, I actually meant objects of class templatebrain. If you could make these for all the brains that you have access to that would be really helpful. Best, G.