natverse nat.nblast issues

natverse / nat.nblast

R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.

http://natverse.org/nat.nblast/

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issues

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setup github actions for check, docs

#50 jefferis closed 1 week ago
0
Topological NBLAST

#49 dokato opened 1 year ago
0
Quick fix in normalised scoring for cases where nrns/dps unnamed

#48 dokato opened 2 years ago
0
[BUG] in scaling when neurons don't have names

#47 dokato opened 2 years ago
0
Minor fix in nblast documentation

#46 dokato opened 2 years ago
0
Zenodo DOI

#45 schlegelp closed 3 years ago
1
topoNBLAST first implementation added

#44 dokato opened 3 years ago
0
Allow nblast to use basic topological information about neurons

#43 jefferis opened 3 years ago
11
Have nblast work with Labels in given neuronlist/dotprops objects

#42 alexanderbates opened 3 years ago
2
Multi-core performance and memory consumption

#41 lankiszhang opened 3 years ago
4
optimise for memory for very large all by all NBLAST

#40 jefferis opened 4 years ago
0
nblast for swc files

#39 albertplus007 closed 4 years ago
11
Teach normalised NBLAST to keep scale

#38 jefferis closed 4 years ago
1
Release nat.nblast 1.6.5

#37 jdmanton closed 4 years ago
3
nblast (or nblast_allbyall) fails with error "Cloud has no points"

#36 jefferis opened 7 years ago
0
NeuriteBlast fails for FAFB neurons

#35 zhihaozheng opened 7 years ago
1
correct docs for UseAlpha option of nblast

#34 mmc46 closed 5 years ago
0
Include neuron list of superclusters and clusters from nblast online?

#33 jennyl617 closed 7 years ago
3
accept scorematrix as first arg of nhclust

#32 jefferis closed 8 years ago
0
nblast fails to find smat.fcwb if nblast package is not attached.

#31 jefferis opened 8 years ago
4
fix imports for CRAN

#30 jefferis closed 8 years ago
7
add plot3d.nblastres function and give nblast option to return per segment scores

#29 jefferis closed 8 years ago
23
create_scoringmatrix should have a UseAlpha option

#28 alexanderbates opened 8 years ago
1
Add auto progress bars for nblast

#27 jefferis opened 8 years ago
0
Release v1.6.2 to CRAN?

#26 jdmanton closed 8 years ago
0
Conversion to dotprops for nblast(neuron, dotprops) [or vice versa] is rather inefficient

#25 jdmanton opened 9 years ago
2
clarify relationship of nblast with version=1 to Kohl 2013 code

#24 jefferis closed 9 years ago
1
Nblast everything

#23 jdmanton closed 9 years ago
0
CRAN release?

#22 jefferis closed 9 years ago
9
Check out RcppEigen sparse matrices

#21 jefferis closed 9 years ago
2
Switch to using spam, not Matrix, for sparse matrices

#20 jdmanton closed 10 years ago
3
Creating sparse matrices is rather slow

#19 jdmanton closed 10 years ago
5
fix finding diagonals of bigmemory objects

#18 jefferis closed 10 years ago
1
sub_score_mat complains if it receives an ff matrix

#17 jefferis closed 10 years ago
1
scoringmatrix() generic with methods for neuronlist and matrices

#16 jefferis opened 10 years ago
0
enable plyr

#15 jefferis closed 10 years ago
0
Add report generation

#14 jdmanton opened 10 years ago
1
nblast / NeuriteBlast should not be error tolerant by default

#13 jefferis closed 10 years ago
0
nhclust and friends should use distfun

#12 jefferis closed 10 years ago
0
plot3d.hclust fails to evaluate colour

#11 jefferis closed 10 years ago
1
plot3d.hclust fails when db is not set

#10 jefferis closed 10 years ago
2
plot3d.hclust should enable recolouring of selected groups

#9 jefferis closed 5 years ago
0
refactor hclustfc and related functions out of flycircuit

#8 jefferis closed 10 years ago
3
Teach nblast to accept all combinations of dotprops and neuron objects

#7 jdmanton closed 9 years ago
0
add fitting functions for nat.nblast

#6 jefferis closed 10 years ago
3
Teach NeuriteBlast to cope with neuronlist query arguments

#5 jefferis closed 10 years ago
1
Should nblast version parameter be character or integer?

#4 jefferis closed 10 years ago
2
Make documentation for nblast comprehensive

#3 jdmanton closed 10 years ago
1
Add nblast2

#2 jdmanton closed 10 years ago
2
Should nblast2 be renamed nblast?

#1 jefferis closed 10 years ago
1