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natverse
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nat.nblast
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
http://natverse.org/nat.nblast/
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setup github actions for check, docs
#50
jefferis
closed
1 week ago
0
Topological NBLAST
#49
dokato
opened
1 year ago
0
Quick fix in normalised scoring for cases where nrns/dps unnamed
#48
dokato
opened
2 years ago
0
[BUG] in scaling when neurons don't have names
#47
dokato
opened
2 years ago
0
Minor fix in nblast documentation
#46
dokato
opened
2 years ago
0
Zenodo DOI
#45
schlegelp
closed
3 years ago
1
topoNBLAST first implementation added
#44
dokato
opened
3 years ago
0
Allow nblast to use basic topological information about neurons
#43
jefferis
opened
3 years ago
11
Have nblast work with Labels in given neuronlist/dotprops objects
#42
alexanderbates
opened
3 years ago
2
Multi-core performance and memory consumption
#41
lankiszhang
opened
3 years ago
4
optimise for memory for very large all by all NBLAST
#40
jefferis
opened
4 years ago
0
nblast for swc files
#39
albertplus007
closed
4 years ago
11
Teach normalised NBLAST to keep scale
#38
jefferis
closed
4 years ago
1
Release nat.nblast 1.6.5
#37
jdmanton
closed
4 years ago
3
nblast (or nblast_allbyall) fails with error "Cloud has no points"
#36
jefferis
opened
7 years ago
0
NeuriteBlast fails for FAFB neurons
#35
zhihaozheng
opened
7 years ago
1
correct docs for UseAlpha option of nblast
#34
mmc46
closed
5 years ago
0
Include neuron list of superclusters and clusters from nblast online?
#33
jennyl617
closed
7 years ago
3
accept scorematrix as first arg of nhclust
#32
jefferis
closed
8 years ago
0
nblast fails to find smat.fcwb if nblast package is not attached.
#31
jefferis
opened
8 years ago
4
fix imports for CRAN
#30
jefferis
closed
8 years ago
7
add plot3d.nblastres function and give nblast option to return per segment scores
#29
jefferis
closed
8 years ago
23
create_scoringmatrix should have a UseAlpha option
#28
alexanderbates
opened
8 years ago
1
Add auto progress bars for nblast
#27
jefferis
opened
8 years ago
0
Release v1.6.2 to CRAN?
#26
jdmanton
closed
8 years ago
0
Conversion to dotprops for nblast(neuron, dotprops) [or vice versa] is rather inefficient
#25
jdmanton
opened
9 years ago
2
clarify relationship of nblast with version=1 to Kohl 2013 code
#24
jefferis
closed
9 years ago
1
Nblast everything
#23
jdmanton
closed
9 years ago
0
CRAN release?
#22
jefferis
closed
9 years ago
9
Check out RcppEigen sparse matrices
#21
jefferis
closed
9 years ago
2
Switch to using spam, not Matrix, for sparse matrices
#20
jdmanton
closed
10 years ago
3
Creating sparse matrices is rather slow
#19
jdmanton
closed
10 years ago
5
fix finding diagonals of bigmemory objects
#18
jefferis
closed
10 years ago
1
sub_score_mat complains if it receives an ff matrix
#17
jefferis
closed
10 years ago
1
scoringmatrix() generic with methods for neuronlist and matrices
#16
jefferis
opened
10 years ago
0
enable plyr
#15
jefferis
closed
10 years ago
0
Add report generation
#14
jdmanton
opened
10 years ago
1
nblast / NeuriteBlast should not be error tolerant by default
#13
jefferis
closed
10 years ago
0
nhclust and friends should use distfun
#12
jefferis
closed
10 years ago
0
plot3d.hclust fails to evaluate colour
#11
jefferis
closed
10 years ago
1
plot3d.hclust fails when db is not set
#10
jefferis
closed
10 years ago
2
plot3d.hclust should enable recolouring of selected groups
#9
jefferis
closed
5 years ago
0
refactor hclustfc and related functions out of flycircuit
#8
jefferis
closed
10 years ago
3
Teach nblast to accept all combinations of dotprops and neuron objects
#7
jdmanton
closed
9 years ago
0
add fitting functions for nat.nblast
#6
jefferis
closed
10 years ago
3
Teach NeuriteBlast to cope with neuronlist query arguments
#5
jefferis
closed
10 years ago
1
Should nblast version parameter be character or integer?
#4
jefferis
closed
10 years ago
2
Make documentation for nblast comprehensive
#3
jdmanton
closed
10 years ago
1
Add nblast2
#2
jdmanton
closed
10 years ago
2
Should nblast2 be renamed nblast?
#1
jefferis
closed
10 years ago
1
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