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nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
https://natverse.org/nat/
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add xyzmatrix.shapelist3d method
#419
jefferis
closed
4 years ago
2
xyzmatrix.mesh3d should have colnames XYZ
#418
jefferis
closed
4 years ago
0
Setting fig size missing in vignette plotly.Rmd
#417
mmc46
closed
4 years ago
0
Neuron: fix use of "ties" parameter in approx() call
#416
jefferis
closed
4 years ago
0
Teach write.neuron to set label column of soma when writing SWCs
#415
jefferis
closed
4 years ago
2
subset.neuron() doesn't work inside nmapply()
#414
kjheinz
closed
4 years ago
4
scroll to zoom does not work using nopen3d()
#413
kjheinz
closed
4 years ago
2
Bug in nmapply with progress
#412
jefferis
closed
5 years ago
1
cran check error with ndigest
#411
jefferis
opened
5 years ago
4
Feature/plotly
#410
SridharJagannathan
closed
4 years ago
17
Implement optional plotting engine plotly
#409
SridharJagannathan
closed
4 years ago
0
issues installing nat
#408
dpacheco0921
closed
5 years ago
7
Add logo
#407
alexanderbates
closed
5 years ago
5
Logo
#406
alexanderbates
closed
5 years ago
0
warning in resample.neuron when there are identical points
#405
jefferis
closed
5 years ago
1
Morphometry
#404
alexanderbates
closed
4 years ago
1
Prune
#403
alexanderbates
closed
4 years ago
3
reading neurons from `neuronlistfh` objects is very slow
#402
jefferis
closed
5 years ago
2
Sundry fixes/features from dev branch (inc progress bars)
#401
jefferis
closed
5 years ago
1
Set default filename for write.neurons from neuronlist name
#400
jefferis
closed
5 years ago
0
Improve community status (contributing, explicit license file)
#399
jefferis
opened
5 years ago
1
Updated for removing autogenerated pdf files
#398
SridharJagannathan
closed
5 years ago
1
clean up pdf made by test plots
#397
jefferis
closed
5 years ago
1
Updated for #394
#396
SridharJagannathan
closed
5 years ago
1
Updated for Fix link to SWC spec #393
#395
SridharJagannathan
closed
5 years ago
3
write.neurons should be more careful about InputFileName
#394
jefferis
closed
5 years ago
5
Fix link to SWC spec
#393
jefferis
closed
5 years ago
1
First batch of functions from catnat
#392
alexanderbates
closed
5 years ago
0
`read.neurons` returns no error message when the input SWC file has a bad header
#391
artxz
opened
5 years ago
0
Transparent support for indexing neuronlists with numeric ids
#390
jefferis
opened
5 years ago
1
graph.nodes (and therefore endpoints) does not return isolated nodes
#389
jefferis
closed
5 years ago
0
cmtk.streamxform and xform.default inconsistent with affine matrices
#388
jefferis
opened
5 years ago
3
teach xform to scale neuron diameter when appropriate
#387
jefferis
opened
5 years ago
5
read.neurons should give better error for non-existent file/folder
#386
jefferis
closed
5 years ago
0
read.nrrd.header cannot cope with 4D CMTK deformation fields
#385
jefferis
opened
5 years ago
0
fix bug in write.im3d/write.nrrd for raw detached nrrd
#384
jefferis
closed
5 years ago
1
read.neurons should set names to match neuron$NeuronName
#383
jefferis
closed
5 years ago
1
Teach xform and friends to handle nrrd deformation fields
#382
jefferis
closed
5 years ago
2
Teach read.neurons to read remote zip file
#381
jefferis
closed
5 years ago
0
read.neurons gives duplicate error messages
#380
jefferis
closed
6 years ago
0
plot.neuronlist fails to plot somata for neuron objects
#379
jefferis
closed
6 years ago
0
cmtk.bindir fails when cmtk is present in its build directory but not installed
#378
jefferis
closed
5 years ago
2
NeuroGeometry: Make a function to intersect neurons with a 2D plane
#377
Erginkayam
opened
6 years ago
0
bug in endpoints with multiple subtrees
#376
Erginkayam
opened
6 years ago
3
spine doesn't work for multi-tree neurons
#375
jefferis
opened
6 years ago
0
endpoints return values inconsistent for igraph/neuron input
#374
jefferis
opened
6 years ago
0
Make it easier for end users to find PointNo for neurons/graphs
#373
jefferis
closed
6 years ago
0
Speed up by spine by considering end points only
#372
jefferis
closed
6 years ago
0
plot3d error when neuronlist has no names
#371
jefferis
closed
6 years ago
0
Allow plot3d.neuron to apply transparency to somas
#370
fmlove
closed
6 years ago
0
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