catmaid_get_treenode_table doesn't return type column

[mmc46]

tnt=catmaid_get_treenode_table(487780)
str(tnt)
'data.frame':   3319 obs. of  10 variables:
 $ id           : int  2570502 2574274 2628489 3971731 3971732 3971736 3971738 3971741 3971754 3971785 ...
 $ parent_id    : int  3997071 NA 3997143 2574274 3971731 3971732 3971736 3971738 3971741 3971741 ...
 $ confidence   : int  5 5 5 5 5 5 5 5 5 5 ...
 $ x            : num  426403 430010 425890 430031 430027 ...
 $ y            : num  235318 237901 236087 237827 237798 ...
 $ z            : num  132650 129150 132335 129115 129080 ...
 $ r            : num  -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 ...
 $ user_id      : int  75 75 75 92 92 92 92 92 92 92 ...
 $ last_modified: num  1.47e+09 1.46e+09 1.47e+09 1.47e+09 1.47e+09 ...
 $ reviewer_id  : Factor w/ 0 levels: NA NA NA NA NA NA NA NA NA NA ...
 - attr(*, "tags")='data.frame':    99 obs. of  2 variables:
  ..$ id : int  3972006 3972133 3972389 3972507 3972975 3973702 3973940 3975345 3976049 3976069 ...
  ..$ tag: chr  "uncertain continuation" "uncertain end" "uncertain end" "ends" ...
 - attr(*, "reviews")='data.frame': 0 obs. of  2 variables:
  ..$ id         : int 
  ..$ reviewer_id: int 

But according to doc it should http://jefferis.github.io/rcatmaid/reference/catmaid_get_treenode_table.html

[jefferis]

Thanks. That seems to be a doc error – I don't see any sign of a type column in the results.

It may have disappeared around this commit:

https://github.com/jefferis/rcatmaid/commit/f30a6153384bf72e56c7ee09258891b82b703ca5

On 16 Feb 2017, at 16:35, Marta Costa notifications@github.com wrote:

tnt=catmaid_get_treenode_table(487780) str(tnt) 'data.frame': 3319 obs. of 10 variables: $ id : int 2570502 2574274 2628489 3971731 3971732 3971736 3971738 3971741 3971754 3971785 ... $ parent_id : int 3997071 NA 3997143 2574274 3971731 3971732 3971736 3971738 3971741 3971741 ... $ confidence : int 5 5 5 5 5 5 5 5 5 5 ... $ x : num 426403 430010 425890 430031 430027 ... $ y : num 235318 237901 236087 237827 237798 ... $ z : num 132650 129150 132335 129115 129080 ... $ r : num -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 ... $ user_id : int 75 75 75 92 92 92 92 92 92 92 ... $ last_modified: num 1.47e+09 1.46e+09 1.47e+09 1.47e+09 1.47e+09 ... $ reviewer_id : Factor w/ 0 levels: NA NA NA NA NA NA NA NA NA NA ...

• attr(*, "tags")='data.frame': 99 obs. of 2 variables: ..$ id : int 3972006 3972133 3972389 3972507 3972975 3973702 3973940 3975345 3976049 3976069 ... ..$ tag: chr "uncertain continuation" "uncertain end" "uncertain end" "ends" ...
• attr(*, "reviews")='data.frame': 0 obs. of 2 variables: ..$ id : int ..$ reviewer_id: int But according to doc it should http://jefferis.github.io/rcatmaid/reference/catmaid_get_treenode_table.html

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http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis http://jefferislab.org http://flybrain.stanford.edu

[mmc46]

There is a type column in the CATMAID treenode table.

On 16 Feb 2017, at 20:59, Gregory Jefferis notifications@github.com wrote:

Thanks. That seems to be a doc error – I don't see any sign of a type column in the results.

It may have disappeared around this commit:

https://github.com/jefferis/rcatmaid/commit/f30a6153384bf72e56c7ee09258891b82b703ca5

On 16 Feb 2017, at 16:35, Marta Costa notifications@github.com wrote:

tnt=catmaid_get_treenode_table(487780) str(tnt) 'data.frame': 3319 obs. of 10 variables: $ id : int 2570502 2574274 2628489 3971731 3971732 3971736 3971738 3971741 3971754 3971785 ... $ parent_id : int 3997071 NA 3997143 2574274 3971731 3971732 3971736 3971738 3971741 3971741 ... $ confidence : int 5 5 5 5 5 5 5 5 5 5 ... $ x : num 426403 430010 425890 430031 430027 ... $ y : num 235318 237901 236087 237827 237798 ... $ z : num 132650 129150 132335 129115 129080 ... $ r : num -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 ... $ user_id : int 75 75 75 92 92 92 92 92 92 92 ... $ last_modified: num 1.47e+09 1.46e+09 1.47e+09 1.47e+09 1.47e+09 ... $ reviewer_id : Factor w/ 0 levels: NA NA NA NA NA NA NA NA NA NA ...

• attr(*, "tags")='data.frame': 99 obs. of 2 variables: ..$ id : int 3972006 3972133 3972389 3972507 3972975 3973702 3973940 3975345 3976049 3976069 ... ..$ tag: chr "uncertain continuation" "uncertain end" "uncertain end" "ends" ...
• attr(*, "reviews")='data.frame': 0 obs. of 2 variables: ..$ id : int ..$ reviewer_id: int But according to doc it should http://jefferis.github.io/rcatmaid/reference/catmaid_get_treenode_table.html

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-- Gregory Jefferis, PhD Division of Neurobiology MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus Cambridge, CB2 OQH, UK

http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis http://jefferislab.org http://flybrain.stanford.edu

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