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CellTrek
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Using Celltrek on non-matching data ST and SC data.
#42
Dillon214
opened
1 month ago
0
[Question] Is it possible to superimpose a network on spatial image?
#41
MatteoRiva95
opened
1 month ago
0
Error: package or namespace load failed for ‘CellTrek’
#40
Jia-Shen-1212
opened
3 months ago
0
Error in rownames(st_data[[st_assay]]@data) : no slot of name "data" for this object of class "Assay5", Possible Seurat v5.0 error
#39
tsoruu
opened
6 months ago
5
ERROR
#38
haitianyisee
opened
6 months ago
1
celltrek_vis Error
#37
a365485265
opened
6 months ago
0
Errors in CellTrek::traint on example data from README
#36
katherine-benjamin
opened
8 months ago
3
Failed to visualize the ST data, error returns "Error in SpatialPlot(object = object, group.by = group.by, images = images, : Could not find any spatial image information"
#35
14MBD4
closed
8 months ago
1
Customized Plot
#34
awesomedeer
opened
9 months ago
0
Normalization methods
#33
awesomedeer
opened
9 months ago
0
Request for cell type annotation of mouse kidney and DCIS1 datasets
#32
shiy-shiy
opened
9 months ago
0
Dealing with spatial data with merged samples
#31
Kennyluo4
opened
11 months ago
0
Celltrek output to spot and cell mapping
#30
smk5g5
opened
12 months ago
0
"Celltrek"_Simualtion dataset
#29
13198910213
opened
1 year ago
0
lack of single-cell transcriptome data from the same patient
#28
ozuoano
opened
1 year ago
1
Publicly available Single cell data with ST data
#27
AteeqMKhaliq
closed
1 year ago
1
selection of Edge cut-off threshold for spatial colocalisation of cells
#26
pratapstat
opened
1 year ago
2
keep raw data in celltrek object
#25
kguion1
opened
1 year ago
1
celltrek_vis error
#24
wang0430
opened
1 year ago
1
Error while running CellTrek:celltrek function
#23
pratapstat
opened
1 year ago
1
Error: 'DT_boot_mst' is not an exported object from 'namespace:CellTrek'
#22
kaizen89
opened
1 year ago
0
Assigning all single cells
#21
cadyyuheng
opened
1 year ago
1
clarification on overall method
#20
kguion1
opened
1 year ago
2
Error: invalid character indexing
#19
AteeqMKhaliq
opened
1 year ago
1
Error in intI(j, n = x@Dim[2], dn[[2]], give.dn = FALSE) : invalid character indexing
#18
kguion1
closed
1 year ago
2
Utilizing CellChat after CellTrek
#17
kguion1
closed
1 year ago
1
Question about Supplementary Figure 7e
#16
Chuang1118
opened
1 year ago
1
How to keep all the metadata from the seurat traint object after running CellTrek::celltrek()
#15
AF788
opened
2 years ago
1
Visualization and error in celltrek_vis
#14
s849
opened
2 years ago
3
Some cells are missing from output
#13
smorabit
opened
2 years ago
4
Coembedding shows batch effect
#12
Laolga
opened
2 years ago
4
tissue_possitions_lists and images outputs for sample DCIS1 and DCIS2
#11
ruqianl
closed
2 years ago
2
should I subset the scRNA data or the ST data?
#10
Danyking
closed
2 years ago
1
Disorder coordiantes for 10x visium data.
#9
zhou-ran
closed
2 years ago
3
Minimum feature overlap between scRNAseq and spatial method?
#8
annamath
closed
2 years ago
1
Dimension reduce warning in function celltrek
#7
parkjooyoung99
closed
2 years ago
2
Simualtion dataset
#6
hiraksarkar
closed
2 years ago
2
error on no scal.factors
#5
bomacchih
closed
2 years ago
0
Question about "celltrek_vis" results
#4
ZeroLi-Bio
closed
2 years ago
2
General Questions
#3
cadyyuheng
closed
2 years ago
3
Error in CellTrek::celltrek step
#2
RENXI-NUS
closed
2 years ago
5
The error of CellTrek
#1
jincanke
closed
2 years ago
2