how to translate the copykat results to inferCNV i6 HMM (the six-state CNV model)

navinlabcode / copykat

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how to translate the copykat results to inferCNV i6 HMM (the six-state CNV model) #106

Open sadiexiaoyu opened 7 months ago

sadiexiaoyu commented 7 months ago

Hi, thanks for the cool software! I would like to ask how to connect the copykat results into i6HMM state in inferCNV? Thanks! 0x: complete loss 0.5x: loss of one copy 1x: neutral 1.5x: addition of one copy 2x: addition of two copies 3x: essentially a placeholder for >2x copies but modeled as 3x.