search

navinlabcode / copykat

Other
203 stars 54 forks source link

Error while producing results #69

Open Laolga opened 1 year ago

Laolga commented 1 year ago

Hi, could you please help me to understand what might be the issue:

[1] "running copykat v1.0.8 updated 02/25/2022 introduced mm10 module, fixed typos"
[1] "step1: read and filter data ..."
[1] "24879 genes, 101 cells in raw data"
[1] "18566 genes past LOW.DR filtering"
[1] "step 2: annotations gene coordinates ..."
[1] "start annotation ..."
[1] "step 3: smoothing data with dlm ..."
[1] "step 4: measuring baselines ..."
number of iterations= 369 
number of iterations= 140 
number of iterations= 229 
number of iterations= 154 
number of iterations= 165 
number of iterations= 202 
[1] "step 5: segmentation..."
[1] "step 6: convert to genomic bins..."
[1] "step 7: adjust baseline ..."
[1] "step 8: final prediction ..."
[1] "step 9: saving results..."
Error in write.table(res, paste(sample.name, "prediction.txt", sep = ""),  : 
  object 'res' not found