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navinlabcode / copykat

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Error in cluster mode #83

Open AClab-sgarcia opened 1 year ago

AClab-sgarcia commented 1 year ago

Good afternoon, I'm trying to rum CopyKAT in cluster mode. I have 13 samples and I want to perform the analysis as quick as possible. While doing the analysis I get the following error after step10: Error in jpeg(paste(sample.name, "heatmap.jpeg", sep = ""), height = h * : X11 is not available As far as I know CopyKAT does not open any window (at least it does not do it in my computer). Do you know how can I override this problem?

Thanks!! Great and super useful package!

decodebiology commented 9 months ago

I am having the same issue. Have you found any workaround?. I just want to skip the plotting function from copyKat and jump to the part where it outputs .seg files (segmentation) . But it keeps calling the plot function and gives this error #103.