I'm analyzing blood cancer, and based on an earlier karyotyping experiment the CNVs in my dataset should be quite small and there should be only one or two of them. However, with copyKAT and inferCNV I get a lot of false positives. Is there some way to filter out CNVs in copyKAT?
Hi,
I'm analyzing blood cancer, and based on an earlier karyotyping experiment the CNVs in my dataset should be quite small and there should be only one or two of them. However, with copyKAT and inferCNV I get a lot of false positives. Is there some way to filter out CNVs in copyKAT?