Sorry to bother you, when I run the following code:
copykat.NR <- copykat(rawmat=counts, id.type="S", cell.line="no", ngene.chr=5, win.size=25, KS.cut=0.15, sam.name="AML_NR", distance="euclidean", norm.cell.names=normal.ref, n.cores=20)
[1] "step 4: measuring baselines ..."
[1] "15946 known normal cells found in dataset"
[1] "run with konwn normal..."
[1] "baseline is from known input"
Error in hclust(d, method = "ward.D2"): the size cannot be NA, and the output cannot exceed 65536
Can you help me to solve this problem?
Thank you very much!
Sorry to bother you, when I run the following code: copykat.NR <- copykat(rawmat=counts, id.type="S", cell.line="no", ngene.chr=5, win.size=25, KS.cut=0.15, sam.name="AML_NR", distance="euclidean", norm.cell.names=normal.ref, n.cores=20) [1] "step 4: measuring baselines ..." [1] "15946 known normal cells found in dataset" [1] "run with konwn normal..." [1] "baseline is from known input" Error in hclust(d, method = "ward.D2"): the size cannot be NA, and the output cannot exceed 65536 Can you help me to solve this problem? Thank you very much!