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navinlabcode
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copykit
Toolkit for single-cell copy number analysis
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Update NEWS.md
#99
darlanminussi
closed
1 year ago
0
Update calcInteger.R
#98
Puriney
closed
1 year ago
1
Error when smoothed_bincounts is not in the assay
#97
Puriney
closed
1 year ago
1
mouse genome
#96
LeonLiu-ZL
closed
1 year ago
1
application of CopyKit
#95
veramazzara
closed
1 year ago
1
RunSegmentation multipcf doesn't respect gamma parameter
#94
seedgeorge
closed
1 year ago
2
Normalise with 'normal' cells
#93
seedgeorge
closed
1 year ago
1
Devel
#92
darlanminussi
closed
1 year ago
0
Errors in the plotRatio() call
#91
srbehera
closed
1 year ago
5
Install Instructions
#90
akcasasent
closed
1 year ago
2
export IGV seg ratio file
#89
MinBio
opened
2 years ago
1
germline gain not called in single cells
#88
proukakis
closed
1 year ago
4
is there a way to get lists of CNVs
#87
proukakis
closed
2 years ago
4
T2T-Chm13
#86
proukakis
closed
2 years ago
1
runCountRead does not recognize .bam files
#85
Romeo1-1
closed
1 year ago
7
Devel
#84
darlanminussi
closed
2 years ago
0
Devel
#83
darlanminussi
closed
2 years ago
0
Devel
#82
darlanminussi
closed
2 years ago
0
Pca
#81
darlanminussi
closed
2 years ago
0
scquantum
#80
teng-gao
closed
2 years ago
6
findVariableGenes returns NA's
#79
aislyn
closed
2 years ago
1
name of findNormalCells is slightly misleading
#78
aislyn
closed
2 years ago
1
fix calcIntegere
#77
darlanminussi
closed
2 years ago
0
removing set.seeds
#76
darlanminussi
closed
2 years ago
0
Scquantum
#75
darlanminussi
closed
2 years ago
0
Bioc check
#74
darlanminussi
closed
2 years ago
0
Other scaffolds
#73
darlanminussi
closed
2 years ago
0
Devel
#72
darlanminussi
closed
2 years ago
0
removing dependency for leidenbase
#71
darlanminussi
closed
2 years ago
0
changes to hg38 200kb scaffold
#70
darlanminussi
closed
2 years ago
0
fix for bioc_3_14
#69
darlanminussi
closed
2 years ago
0
Devel
#68
darlanminussi
closed
2 years ago
0
Devel
#67
darlanminussi
closed
2 years ago
0
Devel
#66
darlanminussi
closed
2 years ago
0
ggalluvial not loading with copykit
#65
aislyn
closed
2 years ago
1
Devel
#64
darlanminussi
closed
2 years ago
0
Devel
#63
darlanminussi
closed
3 years ago
0
row-based subsetting for all plot functions
#62
aislyn
closed
2 years ago
1
plotRatio() doesn't always let you plot a subset of bins
#61
aislyn
closed
2 years ago
4
Devel
#60
darlanminussi
closed
3 years ago
0
plotHeatmap() doesn't catch attempt to add multiple row labels in consensus mode
#59
aislyn
closed
3 years ago
1
The function name "filterCells()" is misleading because its function isn't actually filtering
#58
aislyn
closed
2 years ago
2
remove point color (i.e. outline) on plotmetrics() plot
#57
aislyn
closed
3 years ago
1
Automated detection of segments of interest
#56
aislyn
opened
3 years ago
1
Progress bar for calcInteger()
#55
aislyn
closed
3 years ago
2
calcInteger() does not catch failures in scquantum
#54
aislyn
closed
2 years ago
2
Devel
#53
darlanminussi
closed
3 years ago
0
Devel
#52
darlanminussi
closed
3 years ago
0
Devel
#51
darlanminussi
closed
3 years ago
0
Devel
#50
darlanminussi
closed
3 years ago
0
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