NML export - Githubissues

navis-org / navis

Python library for analysis of neuroanatomical data.

https://navis.readthedocs.io

GNU General Public License v3.0

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NML export #126

Open perlman opened 7 months ago

perlman commented 7 months ago

Support export of the NML format used in WebKnossos.

This is work in progress. This is just a very rough prototype to output a single neuron.

[x] Basic NML export
[ ] Zip'd NML export
[ ] Multiple skeletons in a single NML file (optional)
[ ] Test data in WebKnossos
[ ] Support the full range of inputs (single neuron, neuron list, etc)

Example:

neuron = navis.read_swc("1.swc")
navis.write_nml(neuron, "1.nml")