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navis-org
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navis
Python library for analysis of neuroanatomical data.
https://navis.readthedocs.io
GNU General Public License v3.0
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Bug changing connector size in navis.2d_plot()
#93
mwinding
closed
2 years ago
2
New feature: split connectivity
#92
schlegelp
opened
2 years ago
3
read_swc: strange behaviour when file path contains typo
#91
schlegelp
opened
2 years ago
2
Vispy extras and docs
#90
clbarnes
closed
2 years ago
6
improve strahler_index
#89
schlegelp
opened
2 years ago
4
Use extreqs package for parsing extras from reqs
#88
clbarnes
closed
2 years ago
1
[WIP] Shared memory for NBLAST
#87
schlegelp
opened
2 years ago
12
use *some other vispy backend* instead of pyqt5
#86
clbarnes
closed
2 years ago
12
Fix PendingDeprecationWarning around node remapping
#85
clbarnes
closed
2 years ago
1
Mapping TreeNeuron presynapses to postsynaptic bodyID
#84
jakobtroidl
closed
2 years ago
2
Advice for M1 mac installation
#83
swilson27
opened
2 years ago
8
Excitatory / Inhibitory information about synapses in neuprint
#82
jakobtroidl
closed
10 months ago
2
Handle symlinked `transformix` executables
#81
jasper-tms
closed
2 years ago
1
Graphviz fix
#80
clbarnes
closed
2 years ago
8
Error in navis.plot3d when radius = True
#79
kuanawanda
closed
2 years ago
3
Update meshing.py
#78
standardgalactic
closed
2 years ago
4
feature request: cable_overlap returns neuron or node_list
#77
kuanawanda
closed
2 years ago
2
color skeleton branches by the strahler index in blender
#76
artxz
closed
2 years ago
2
The MiCrONS Datasets tutorial
#75
aquineuro
closed
10 months ago
11
Blender Blobs from Neuromorpho
#74
psynaptix1
closed
2 years ago
3
Neuromorpho neuron fetch
#73
psynaptix1
closed
2 years ago
1
models: add BayesianTraversalModel
#72
aschampion
closed
2 years ago
2
split_axon_dendrite not generating errors and just quiting
#71
dadanhan
closed
2 years ago
7
Fix to prevent rounding with fraction voxels
#70
Robbie1977
closed
2 years ago
0
NBLAST score matrix builder v2
#69
clbarnes
closed
2 years ago
20
Neuron docs
#68
schlegelp
closed
2 years ago
0
Add dashboard to explore NBLAST results
#67
schlegelp
opened
2 years ago
0
Return IDs of neurons appended to {N,Syn}Blaster
#66
clbarnes
closed
2 years ago
1
Fix deepcopy(my_base_neuron)
#65
clbarnes
closed
2 years ago
1
Add {read,write}_h5 to API docs
#64
clbarnes
closed
2 years ago
4
Meaning of presynaptic and postsynaptic connectors
#63
dadanhan
closed
2 years ago
8
blender integration macosX
#62
fcollman
closed
2 years ago
7
plot_flat not an attribute of navis
#61
dadanhan
closed
2 years ago
2
Merge dev into master
#60
schlegelp
closed
2 years ago
0
Fix ncollpyde in readthedocs
#59
clbarnes
closed
2 years ago
6
Basic io.write_nrrd implementation
#58
clbarnes
closed
2 years ago
1
Merge master into dev
#57
schlegelp
closed
2 years ago
0
fix for other OS path separators
#56
Robbie1977
closed
2 years ago
1
Citing navis
#55
bdpedigo
closed
2 years ago
2
add clusters parameter for plotting
#54
schlegelp
closed
2 years ago
1
Break navis into submodules
#53
schlegelp
opened
2 years ago
0
Dotprops plotting: improve scale vector
#52
schlegelp
closed
2 years ago
2
meshio for mesh I/O
#51
clbarnes
opened
2 years ago
3
upload_neuron sends wrong argument to navis.write_swc()
#50
kuanawanda
closed
2 years ago
3
pykdtree requires OMP_NUM_THREADS flag on Linux
#49
schlegelp
opened
2 years ago
6
question about geodasic distance
#48
zylittlep
closed
2 years ago
1
NBLAST: look into setting an upper distance for nearest-neighbour search
#47
schlegelp
closed
2 years ago
2
Check out point cloud utils
#46
schlegelp
opened
2 years ago
2
Function to remove log handler
#45
clbarnes
closed
2 years ago
1
Environment variable to skip default log setup
#44
clbarnes
closed
3 years ago
3
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