Closed clbarnes closed 1 year ago
Now also adds a get_annotation_graph
function which returns a nx.DiGraph
of annotations, and the skeletons whose neurons they annotate.
Also refactors pulling the catmaid credentials from environment variables so that all arguments can now be done this way. This was implemented in a classmethod of the CatmaidInstance
and connect_catmaid
is a thin wrapper over that.
Caused problems for annotation names with re special characters. Includes tests. Resolves #220