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navis-org / pymaid

Python library to interface with CATMAID servers. Fully interoperable with navis.
https://pymaid.readthedocs.io/en/latest/
GNU General Public License v3.0
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Pymaid seems incompatible with numpy 1.24.0 #230

Closed jialumaomao closed 1 year ago

jialumaomao commented 1 year ago

Pymaid now seems to be incompatible with a new version of numpy, 1.24.0. When I try to pip install python-catmaid in a fresh virtual environment, I can't then import pymaid in a python shell. The error it throws is module numpy has no attribute 'bool'.

(trying to pip install an older version of numpy also doesn't work.)

Would be great to have this working again!

schlegelp commented 1 year ago

Hi! I suspect that the incompatibility is due to navis, not pymaid itself (see https://github.com/navis-org/navis/issues/115).

I just released navis version 1.4.0 which should fix the issues with numpy. Please try updating (pip3 install navis -U) and let us know if this does the trick! Also make sure to check out the change log for other changes.

jialumaomao commented 1 year ago

This fixed it! Thanks, everything is working great again.

schlegelp commented 1 year ago

Great! I will close the issue then. Feel free to re-open if you run into another problem.