navis-org / pymaid

Python library to interface with CATMAID servers. Fully interoperable with navis.
https://pymaid.readthedocs.io/en/latest/
GNU General Public License v3.0
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Neuron label logic #236

Closed clbarnes closed 1 year ago

clbarnes commented 1 year ago

In the frontend, neuron labels can be constructed from components including ontologies defined by annotations, the neuron name, skeleton ID, etc.. These labels cannot (AFAIK) be exported. It would be nice to have some way of doing so, or recapitulating the label creation logic locally.

schlegelp commented 1 year ago

Agreed. I recently had someone ask me how to do that. Is there by any chance an API endpoint to query how it's configured for a given user?

clbarnes commented 1 year ago

There must be, somewhere in the user settings. But for the moment I'm just looking into replicating the formatting logic.