For certain histone modifications, ENCODE uses the gappedPeak representation. Right now IDR doesn't support using gappedPeak files - is there a workaround for this? For example, converting a gappedPeak file to narrowPeak file? Or running IDR on the broadPeak file and selecting features in the gappedPeak file which intersect with it?
For certain histone modifications, ENCODE uses the gappedPeak representation. Right now IDR doesn't support using gappedPeak files - is there a workaround for this? For example, converting a gappedPeak file to narrowPeak file? Or running IDR on the broadPeak file and selecting features in the gappedPeak file which intersect with it?