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nboley / idr

IDR
GNU General Public License v2.0
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Fails with ValueError on narrow peaks #44

Closed balwierz closed 5 years ago

balwierz commented 5 years ago

My files are simple MACS2 narrowPeak. idr fails on these. There is an empty "idrValues.txt" file created

$ idr --samples s1.narrowPeak s2.narrowPeak 
Initial parameter values: [0.10 1.00 0.20 0.50]
Final parameter values: [1.99 1.40 0.91 0.57]
idr --samples s1.narrowPeak s2.narrowPeak 

Traceback (most recent call last):
  File "idr", line 10, in <module>
    idr.idr.main()
  File "idr.py", line 774, in main
    useBackwardsCompatibleOutput=args.use_old_output_format)
  File "idr.py", line 415, in write_results_to_file
    if localIDRs == None or IDRs == None:
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()

$ python3 --version
Python 3.7.2+
balwierz commented 5 years ago

When I updated to version 2.0.3 the problem disappeared. But the installation instructions are giving an url to an old version and documentation of the new version... Closing this but and opening a documentation one.