ncats / CTSA-Metrics

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Vitals doesn't include many applicable SNOMED concepts #41

Open sguptawustl opened 2 years ago

sguptawustl commented 2 years ago

For our site, we use the attached list of concepts/ancestors for all our vitals records. And out of 117 unique ancestors only one (4245997) is included in the NCATS vitals inclusion list (https://github.com/ncats/CTSA-Metrics/blob/master/Informatics%20Metric%20OMOP%20PostgreSQL.sql):

/* 
Spec: At least one vital: height, weight, blood pressure, BMI, or temperature
height
3036277
, weight
3025315
, blood pressure
45876174
, BMI
1002813
4245997
, temperature
1004059
4178505
# concepts exist in both meas and obs
*/

As a result our metric shows as if we have (almost) no vital signs data in our repository. Please advise how we should proceed for this particular item.

VitalsAncestorConceptId_WUSTL.txt