Right now Pubtator annotates the title and the abstract and returns annotations with duplicate infos_identifier numbers. These need to be removed and new annotations need to be able to added only if they are have not already been added to that article.
Constraints
Cannot lowercase the text before sending it to Pubtator due to case differences in the gene space.
Instead of Title and Abstract, we are allowed to concatenate title+abstract, however, it would be better if these were still kept separate.
This needs to be written in the weekly update function
Existing duplicate Pubtator annotations need to be removed.
Right now Pubtator annotates the title and the abstract and returns annotations with duplicate
infos_identifier
numbers. These need to be removed and new annotations need to be able to added only if they are have not already been added to that article.Constraints