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ncats / bard

Sources for the BioAssay Research Database
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annotation url throws exception for some assay ids #19

Closed jasiedu closed 11 years ago

jasiedu commented 11 years ago

http://bard.nih.gov/api/v9/assays/2868/annotations

Throws a stack trace:

<html><head><title>Apache Tomcat/6.0.26 - Error report</title><style><!--H1 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:22px;} H2 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:16px;} H3 {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;font-size:14px;} BODY {font-family:Tahoma,Arial,sans-serif;color:black;background-color:white;} B {font-family:Tahoma,Arial,sans-serif;color:white;background-color:#525D76;} P {font-family:Tahoma,Arial,sans-serif;background:white;color:black;font-size:12px;}A {color : black;}A.name {color : black;}HR {color : #525D76;}--></style> </head><body><h1>HTTP Status 500 - </h1><HR size="1" noshade="noshade"><p><b>type</b> Exception report</p><p><b>message</b> <u></u></p><p><b>description</b> <u>The server encountered an internal error () that prevented it from fulfilling this request.</u></p><p><b>exception</b> <pre>java.lang.NumberFormatException: For input string: &quot;UniProt&quot;
java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)
java.lang.Integer.parseInt(Integer.java:449)
java.math.BigInteger.&lt;init&gt;(BigInteger.java:316)
java.math.BigInteger.&lt;init&gt;(BigInteger.java:451)
gov.nih.ncgc.bard.rest.BARDAssayResource.getAnnotations(BARDAssayResource.java:307)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$ResponseOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:205)
com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:288)
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1483)
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1414)
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1363)
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1353)
com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:414)
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:537)
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:708)
javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
</pre></p><p><b>note</b> <u>The full stack trace of the root cause is available in the Apache Tomcat/6.0.26 logs.</u></p><HR size="1" noshade="noshade"><h3>Apache Tomcat/6.0.26</h3></body></html>
caodac commented 11 years ago

This has been fixed.