Module 5 (branch 1): Find genes associated with clusters
Module 6 (branch 1): Find pathways associated with genes
Module 7 (branch 1): Find chemicals/drugs associated with pathways
Module 5-7 (branch 2): Find chemicals/drugs that have differential effects between the subcohort phenotypes
RTX Bid 3 = I can already provide code to answer this.
Please provide the Github link to this code (done already). And, ideally, any documentation or comments. A concrete example with inputs and outputs would be helpful.
Module 5 (branch 1): Find genes associated with clusters Module 6 (branch 1): Find pathways associated with genes Module 7 (branch 1): Find chemicals/drugs associated with pathways Module 5-7 (branch 2): Find chemicals/drugs that have differential effects between the subcohort phenotypes
RTX Bid 3 = I can already provide code to answer this.
Please provide the Github link to this code (done already). And, ideally, any documentation or comments. A concrete example with inputs and outputs would be helpful.
GitHub Code lInk in Bid Sheet is API https://github.com/RTXteam/RTX/blob/master/code/reasoningtool/QuestionAnswering/fisher_exact.py